Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 203 1e-46 seq2 138 3e-27 seq25 105 2e-17 seq19 89.7 2e-12 >seq1 Length=2965994 Score = 203 bits (224), Expect = 1e-46 Identities = 476/716 (66%), Gaps = 13/716 (2%) Strand=Plus/Minus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || |||||||| ||||| || || || ||||| | | | | | ||||| | | Sbjct 1666469 TATTGGTATCGATTTGGGTACCACATACTCCTGTGTGGGTATCTTCCGTGATGATAGAAT 1666410 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 ||||| || || ||||| ||||| ||| | || || || || | |||||| || || || Sbjct 1666409 CGAAATTATCGCCAATGACCAAGGAAACCGTACCACACCTTCCTTCGTTGCCTTCACAGA 1666350 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380 || |||||| |||| || ||| | || || || |||| || || |||| || || Sbjct 1666349 TACCGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACAC 1666290 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCT 349438 || || ||||||||||| || |||||| | | || | || || | | || | | Sbjct 1666289 TGTCTTCGATGCTAAGCGTCTGATTGGTCGCAAGTTCGCAGATGCAGAGGTCCA--AGCC 1666232 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATTATT 349495 ||| | || || || ||||| | || || ||| ||| || ||| |||| Sbjct 1666231 GATATGAAGCACTTCCCTTTCAAGGTCATT------GACCGTGCCGGAAAGCCAGTTATC 1666178 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || || || || ||||| ||| ||||||||||| || ||| | Sbjct 1666177 GAGGTTGAGTTCAAGGGCGAGACTAAGCAATTCACACCAGAAGAAATTTCTTCTATGATC 1666118 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 || || || |||| || | ||||| || || | || | ||| || | | || || Sbjct 1666117 TTGGTCAAGATGAGAGAGACAGCTGAGGCTTACCTTGGAGGAACTGTCAACAACGCCGTC 1666058 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || ||||| || || | ||| | || ||| || || || || ||||| | Sbjct 1666057 GTCACAGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTC 1665998 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | || ||||| | || || || ||||| || || || || ||||| || Sbjct 1665997 ATTGCTGGCCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTAC 1665938 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || | || || | || ||| || || |||| || || ||| | ||||| || Sbjct 1665937 GGTTTGGACAAGAAGATTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGGAGGA 1665878 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||| ||||| || || | || |||||||||| || || || || || | || ||| Sbjct 1665877 ACTTTCGATGTTTCTCTCTTGACCATTGAAGAGGGTATCTTCGAGGTCAAGTCCACCGCT 1665818 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGT 349911 ||||| || || | ||||| || || || || || ||||| ||| || ||||| Sbjct 1665817 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGTTAACCACTTTGT 1665762 Score = 163 bits (180), Expect = 9e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||| | ||| || |||||||| || || | Sbjct 1569865 TTTGCATACCACCACGGAGACGAAGAACCAAATGTAAAGTCGATTCTTTTTGGATGTTGT 1569924 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| |||||||| || ||||||||||| |||||||| |||| Sbjct 1569925 AGTCGGAAAGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGAT 1569984 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| || ||||| || ||||| ||||| || || || || || | || |||| Sbjct 1569985 CAGGGGGAATGCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGATG 1570044 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | || | ||||||||||| || || || || || || ||||| Sbjct 1570045 ACTCAACCTCTAAAGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATTTGCAT 1570099 Score = 141 bits (156), Expect = 3e-28 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | ||| ||||| | || || |||||||| || ||||| || | Sbjct 1570093 TTTGCATACCACCACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGT 1570152 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | ||||| ||||| |||||||| ||||| || || || | |||||| || | Sbjct 1570153 AATCGGAGAGGGTTCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGT 1570212 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || |||||||| || ||||| || || || || || ||||| || || | || | || Sbjct 1570213 CGGGGGGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTC-GCTG 1570271 Query 140683 G-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || || ||||| || | ||||||||||| Sbjct 1570272 GACTCGACCTCAAGGGTGATGGTCTTTCCGGT 1570303 Score = 120 bits (132), Expect = 9e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 140547 TCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAG 140606 || |||||||| || ||||| | | |||| ||||| || | || ||||| || ||| Sbjct 1569681 TCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAG 1569740 Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || | ||||| |||||||| ||||| || || ||||| ||||| || || || |||||| Sbjct 1569741 ATCAATCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATCTTGGCCTTAACATTA 1569800 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726 ||||| | ||| || | ||| || || | ||| | |||||||| || | || || ||| Sbjct 1569801 TCAATAGTATCTGAAGATTCTACCTCTAATGTGATGGTCTTTCCAGTCAAGGTCTTGACA 1569860 Query 140727 AAAATCTGCAT 140737 || || ||||| Sbjct 1569861 AAGATTTGCAT 1569871 >seq2 Length=2942574 Score = 138 bits (152), Expect = 3e-27 Identities = 223/317 (70%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243 |||||| || |||| | ||| || | ||||| | ||| || || ||||||||||||| Sbjct 924193 TCATATTTAGCCATAACATCCTCAAGAGCTTTGACAAGACGACGTTGAATATAACCAGTT 924252 Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303 | || || || || ||||| || ||||| |||||||| ||||||| |||||||| Sbjct 924253 TCTGCTGTCTTGACCGCGGTATCGATCAAACCTTCACGACCAGCCATTGCGTGGAAGAAG 924312 Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363 || || || || || || || | | |||| |||| | ||| ||||| | ||||| Sbjct 924313 AACTCTGTTGGGGTGAGACCTCTTAAGTATGAGTTCTCGACAAAACCTCTCGATTCTGGC 924372 Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGAT-TCTCAAACCCATATGGAATTCG 378422 |||| ||| | ||||| |||| || | || || | | | ||||| | | ||||| || Sbjct 924373 GAATAATCGTCCTTTGTGAAATGTGGAAGAGTGCGGTATTTGAAACCGA-AAGGAATACG 924431 Query 378423 TTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAGCAATATTTAAATC 378479 ||| || || ||| ||||| | |||| ||||| ||| |||| |||||| | | Sbjct 924432 TTTACCTTCCACAGATTGTTGGCCCACAAGGGCAGA---CATCTGAGAAATATTGATAGT 924488 Query 378480 ACTACCTTTAGACCCAG 378496 | ||||||||| |||| Sbjct 924489 AGAACCTTTAGAACCAG 924505 Score = 87.8 bits (96), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||| | || ||||||||||| | ||||| ||| || |||| || ||||| || Sbjct 923431 ATTTCCTTAAGACGTGGCACACCGAGAGTAACGTTC---TTGGATGAAATACCAGTGAAA 923487 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 || ||||| || | || | ||| || | || |||||||| ||||| || |||| || Sbjct 923488 TGAAAAGTGTTCAAGGTCATTTGTGTGGCTGGTTCACCAATAGACTGTGCAGCAAGCACA 923547 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594 |||||||| || ||||| ||||| | ||| Sbjct 923548 CCAACCATCTCACCAGGGTTGACCAAAGC 923576 >seq25 Length=821810 Score = 105 bits (116), Expect = 2e-17 Identities = 238/357 (67%), Gaps = 3/357 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || || ||||| | ||| || | | || ||||||||| | |||||| | || | Sbjct 661069 CCTGAGGAGATTTCCGCCATGATTCTCGGAAAGATGAAGGAAGTCGCTGAATCTTACCTC 661010 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | || || || | || ||| ||||||| |||||||| || || || ||| | Sbjct 661009 GGAAAGACTGTCACCCACGCAGTTGTTACTGTTCCAGCCTACTTCAACGACAACCAAAGA 660950 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || | |||||| || || || || || | || | |||||| Sbjct 660949 CAAGCCACTAAGGATGCCGGTATCATTGCCGGTTTGAACGTCCTTCGTATCGTCAATGAA 660890 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || || ||||| ||||| || || | || || || ||| ||| | || Sbjct 660889 CCTACCGCCGCAGCTATTGCTTACGGTTTGGACAA---GACTGAGGGTGAACGTCAAATC 660833 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | |||| | ||||| || ||||| ||||| || || || | |||| || Sbjct 660832 ATTGTCTATGATCTCGGTGGAGGAACTTTCGATGTTTCCCTTCTCTCCATTGACCGTGGT 660773 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 | ||||||||| | ||||| ||||| || || | || ||||||||||| ||| Sbjct 660772 GTCTTTGAAGTTCTTTCTACTGCCGGTGACACTCACTTGGGAGGAGAAGATTTCGAT 660716 >seq19 Length=946993 Score = 89.7 bits (98), Expect = 2e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 266976 GGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCTGAA 267035 || ||||||||||| |||||| || ||||||||| |||||| || | | || Sbjct 471800 GGAGATAAATTTTCATCTCGCCATGGTCAAAAAGGTGTTGTTGGTATCATCGTCAATCAA 471859 Query 267036 GAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCT 267095 ||| ||||||| ||| ||| |||| ||| |||||||| || || |||||||| | | Sbjct 471860 GAAGATATGCCTTTTGCTGATTCTGGAGTTACTCCTGATATCATCATGAATCCTCACGGT 471919 Query 267096 ATTCCTAGTCGTATGACAATTGGTCAATTAAAAGAGACACTTTTAGGAAAAG 267147 | || |||||||||| ||||| || | ||| ||||| ||||||| Sbjct 471920 TTCCCATCTCGTATGACAGTTGGTAAAATGTTGGAGCTACTTTCTGGAAAAG 471971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248265113748