Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq36 167 3e-36 seq9 120 3e-22 >seq36 Length=569963 Score = 167 bits (184), Expect = 3e-36 Identities = 300/436 (69%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 19271 ATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCC 19330 |||||||| ||||| ||||| || |||||||| || | ||| || || ||||| Sbjct 130515 ATGAAGGAGGACAGTATTGATGGTATCTACGATACTTTGAAGATTTGTGCCATGATCTCA 130574 Query 19331 AAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAAT 19389 ||| |||| ||||| || || || | | | | ||||| | | |||| || || Sbjct 130575 AAGAATGCCGGTGGTATTGGTCTCAACATTCACAGA-ATCCGTGCTACTGGTGCATACAT 130633 Query 19390 CAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACAC 19449 | || || |||||| || | ||||| || || ||||| || || ||||||||||| Sbjct 130634 CGCCGGTACCAACGGAAATTCCAATGGTATTGTTCCCATGCTTCGAGTTTTCAACAACAC 130693 Query 19450 GGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGA 19509 ||||| || || | || || || |||||| || |||| || | ||||| || Sbjct 130694 TGCCAGATATGTTGATCAAGGTGGTAACAAACGTCCTGGTGCGTTTGCTGTTTACCTTGA 130753 Query 19510 GCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGA 19569 ||||||||| || || || | || || || || || ||| ||||| ||| | || || Sbjct 130754 GCCATGGCATGCCGATGTTTTCGAGTTTCTTGATCTACGCAAAAACCACGGTAAGGAAGA 130813 Query 19570 GATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGT 19629 | || ||||| |||||| |||||||||||||| || | |||||| || || Sbjct 130814 AGTTCGTGCGCGCGATCTCTTCTATGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGT 130873 Query 19630 TGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGT 19689 ||| ||| | | ||||||| || |||||||| | ||||||||||| | | || || Sbjct 130874 TGAAAAGAATGGAGAATGGACTCTTATGTGCCCCAATGAATGCCCTGGTTTGGCAGATGT 130933 Query 19690 CTACGGCGAGGCGTTC 19705 || ||||||| |||| Sbjct 130934 TTATGGCGAGGAGTTC 130949 Score = 156 bits (172), Expect = 5e-33 Identities = 786/1241 (63%), Gaps = 40/1241 (3%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||| | || || || |||||| |||||| || | ||| || | || Sbjct 131726 GTAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGAAACCGAGGATTTGTGAAGTACT 131667 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || || ||||| ||||| || || || || || |||| || || |||||| Sbjct 131666 AGCAGTAGGCATAGGTGCAACGAGAAGGGAGTTGCGAATTCCGTGTTGCTTGATGGATTG 131607 Query 78654 CTTTAGGCCGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| | ||||||| || ||| | | || ||||||||||| ||| || Sbjct 131606 CTTCAAAGAGTCCCAATCCCACAAATCAGAAGGGGTGACGCCCCACATGTCATATTGGAG 131547 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGA-ACGTCTCGTAAGATCCCTCCTCCTTGGCGA 78766 ||||| ||| | || || || |||| | || ||||| | || ||||| || | Sbjct 131546 TTCACCCTTGGAGACTGGGGAGCC-TTGATAGGTTTCGTACGGGCCAAGTTCCTTTGCAA 131488 Query 78767 GTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCT 78826 ||| || | || ||| |||||||| | | |||||| || ||||||| | Sbjct 131487 TCTCGACAGATGAGGTCAAGGCAGCGTGGTAAATGGTCTCGAAAATCTGGATGTTGAGGT 131428 Query 78827 CGCGCGCCTTG-GTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCC 78885 || | ||| | | || || | ||| | || || ||| |||| || || || Sbjct 131427 -GCTTGGCTTCTGGCGAATCAAATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAGACCT 131369 Query 78886 TGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGG 78945 || || || | |||||| |||||||| || | |||||||||| ||| | | || Sbjct 131368 TGAACACCAACAGCGATAGGTCGGTGACGGAAATTGCTCTTTCTGGCTTCTTGTACTGGA 131309 Query 78946 TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTAC 79005 ||| |||| ||| |||| ||||| ||| | ||| || | ||||||| Sbjct 131308 TAATAGTTGATATCAATGATCTTGTTCAAGTTTCTAACGACAACTTGGACGACCTCGTGA 131249 Query 79006 AATTTGGCGAAATCAAAA------TGATTTCCTTTGATGAAAGTCGGTAG-GCACAGCGA 79058 | || ||||||| || | ||| |||| |||||| ||||| ||| | || Sbjct 131248 AGCTTTTGGAAATCATAAGTTCCCTCATTCATGTTGACGAAAGTTGGTAGAGCA-ATTGA 131190 Query 79059 TGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAA 79118 |||| ||| || || ||| || || ||| ||| | ||| ||||||||||| Sbjct 131189 AGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCAACGATCTCTGTGCACAA 131130 Query 79119 ATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT 79174 || || ||| || || || | |||||| ||||||||||||| ||| || || | Sbjct 131129 GTTGGAGCTGCGA----ATAGTACCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCAT 131074 Query 79175 CCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGA 79234 | ||||| |||| | || | |||||||| ||| || |||| || ||| | Sbjct 131073 CTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGCCTCAAGAATAGAGTACCAAA 131014 Query 79235 TGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGT------ACGTCCGGT 79288 | | ||| || | ||||| ||||||| | | | | | || || Sbjct 131013 GCTTTTGAGCCTTGATAG---TCTTG---CGACCCTTTCCTGCCTTTTCATAACTCTCGT 130960 Query 79289 ACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACA 79348 | | | | ||| |||| ||||| ||||| | || || ||||| || | ||||||| Sbjct 130959 AGAGAGCCTCGAACTCCTCGCCATAAACATCTGCCAAACCAGGGCATTCATTGGGGCACA 130900 Query 79349 TCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGG 79408 | || ||| || | | ||| ||||| || |||||| | || || ||||||| || Sbjct 130899 TAAGAGTCCATTCTCCATTCTTTTCAACACGCTTCATGAACAAATCAGGAATCCACAAGG 130840 Query 79409 CCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAA 79468 | |||||| ||||| ||| | || || | || ||||| || || || |||| Sbjct 130839 CATAGAAGAGATCGCGCGCACGAACTTCTTCCTTACCGTGGTTTTTGCGTAGATCAAGAA 130780 Query 79469 AGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGC 79528 | || | | ||||| ||||| ||||| || || | || |||| ||| || ||| Sbjct 130779 ACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAACGCACCAGGACGTTTGT 130720 Query 79529 CGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGC 79588 || || || | || || | ||| ||||||||||||||||| |||||||| || || | Sbjct 130719 TACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCGAAGCATGGGAACAATAC 130660 Query 79589 CGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-G 79647 | | || ||||| || ||| ||| || ||| | || || || | | | | | Sbjct 130659 CATTGGAATTTCCGTTGGTACCGGCGATGTATGCACCAGTAGCACGGAT-TCTGTGAATG 130601 Query 79648 TGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAG 79707 | || || || || |||| ||| ||||| || || ||| | || |||||| Sbjct 130600 TTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTCAAAGTATCGTAG 130541 Query 79708 ATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 || || || || ||| |||||||| ||| |||||||| Sbjct 130540 ATACCATCAATACTGTCCTCCTTCATGTCGATGAGGAAGCA 130500 >seq9 Length=1448665 Score = 120 bits (132), Expect = 3e-22 Identities = 308/455 (68%), Gaps = 18/455 (4%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| ||||||||| | || || || || || || |||||||||||||| || ||| Sbjct 448570 TTTGCTCAACGTCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGATCTTTC 448629 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | || ||||||||||| |||||||| |||||| | || || | ||||||||||| Sbjct 448630 GCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGACTCACCTTCTCCAACGAA 448689 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTA 60152 || || ||||| ||||| || ||||| || || ||| || | | || ||| | | | Sbjct 448690 CTCATCTCCCGTGACGAAGGTCTCCACACCGATTTCGCA-TGCCTC-CTTTTCTCTCAT- 448746 Query 60153 TTGGAAAAATGCCCTTCCAAGGATATTC--ACAAGAT-TGTTCAGTG-GGCTTGTGAAGT 60208 | | | |||| ||||| | | | |||||| | | | | || |||| | Sbjct 448747 CTCAAGCACCGCCCATCCAAACA-AGCCGTCCAAGATGTCATTACCGAAGCCGTTGAAAT 448805 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 || || ||| | || || || ||||| ||| ||| | || ||| || || Sbjct 448806 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGCGCCCTCTTGGGCATGAACTCTACTCT 448865 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGAAGG 60325 |||| ||| |||||| |||| ||||| || || |||| | || ||||| || | Sbjct 448866 CATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCGTTGC----TTTGGGTAACG 448921 Query 60326 ACCAA-TTTAC-GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 || || | ||| | || ||||| ||||||| ||||||| ||| || |||| || Sbjct 448922 ACAAAGTCTACAAGTCTG-CCAACCCATTCGACTTCATGGAGAACATTTCCTTGGCTGGC 448980 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||| || || ||| | || || ||||| Sbjct 448981 AAGACCAACTTTTTCGAAAAGAGAGTTGGAGATTA 449015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522633327040