Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq36 131 2e-25 seq3 91.5 2e-13 >seq36 Length=569963 Score = 131 bits (144), Expect = 2e-25 Identities = 388/592 (66%), Gaps = 6/592 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | ||||| |||||||| || | ||| || || ||| Sbjct 130360 TCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAAAGTGCTATCGAAACATACA 130419 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | ||||||||||| || || | ||||| || || || ||||| Sbjct 130420 ACTTGATGTCAAACAAGTACTTTACACATGCTTCCCCAACACTCTTTTCTGCGGGTACTC 130479 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | || | || |||||||| | | |||||||| ||| || || || | Sbjct 130480 CACAAGCACAACTTTCATCTTGCTTCCTCATCGACATGAAGGAGGACAGTATTGATGGTA 130539 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || | ||| |||||| ||||| ||| | |||||||| ||| || Sbjct 130540 TCTACGATACTTTGAAGATTTGTGCCATGATCTCAAAGAATGCCGGTGGTATTGGTCTCA 130599 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| ||||||| | || || ||| || || ||||| || | Sbjct 130600 ACATTCACAGAA--TCCGTGCTACTGGTGCATACATCGCCGGTACCAACGGAAATTCCAA 130657 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| || || || ||||| || || ||||||||||| ||| | || || | || ||||| Sbjct 130658 TGGTATTGTTCCCATGCTTCGAGTTTTCAACAACACTGCCAGATATGTTGATCAAGGTGG 130717 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | || || || |||| || | ||||| ||||| ||||| ||||| || | || Sbjct 130718 TAACAAACGTCCTGGTGCGTTTGCTGTTTACCTTGAGCCATGGCATGCCGATGTTTTCGA 130777 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 |||||| || || || || || ||| | ||||| | || ||| || || || || Sbjct 130778 GTTTCTTGATCTACGCAAAAACCACGGTAAGGAAGAAGTTCG-TGCGCGCGATCTCTTCT 130836 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || |||||||||| || | |||||| | || || ||| | | || ||| | Sbjct 130837 ATGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGTTGAAAAGAATGGAGAATGGACTC 130896 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 | |||||||| || || ||||| || | | ||| || || |||||||| Sbjct 130897 TTATGTGCCCCAATGAATGCCCTGGTTTGGCAGATGTTTATGGCGAGGAGTT 130948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 55737 TTTACCGGACGGTGTGGGAGATTCCACA--GAAGAGTCTGATTGACATGAGTGCTGATCG 55794 ||||| ||| || ||||| ||| | || ||| | | || || | ||| ||||||||| Sbjct 131887 TTTACAAGACTGTTTGGGAAATTTCTCAACGAACAAT-TG-TTCAAATGGCTGCTGATCG 131944 Query 55795 TGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGC 55854 |||||| | ||||| || || || || ||||||| |||| || ||||| || ||| Sbjct 131945 TGGTGCATTTATCGATCAATCTCAATCAATGAACATTCACATGAAGGATCCTACAATGGG 132004 Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914 |||| | | || ||||| ||| || ||||| ||| | ||||| || |||||||| Sbjct 132005 CAAGATCACATCTATGCATTTTGCTGGATGGAAATTGGGTTTGAAGACCGGAATGTACTA 132064 Query 55915 TCTGCGGAC 55923 | | || || Sbjct 132065 TTTACGTAC 132073 >seq3 Length=2936196 Score = 91.5 bits (100), Expect = 2e-13 Identities = 202/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| ||| | |||||||| ||||| | ||| |||||||| | || || ||| | Sbjct 1216107 GGTGATAGTCTTGTGAAAATATAACGGGCGCTAGCAGCATCGCTACCTCCCTGAAGTCTG 1216166 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 |||| || | |||||| ||||| | ||| | ||||| | ||| ||||| | |||| Sbjct 1216167 CTACCAAAATTTCCACTTGGCTCGAGACAGTTAACATTGTTCGAGCCGACAAAATCTTGA 1216226 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCC--GTCTGCT 117470 || | | ||||| || ||| | ||||||||||||||||| ||| | || Sbjct 1216227 GCGAGGCCAACAATGGTCATTTGCATCGAAGCCTCACCATGGTGATAGGCCGAGACTTGA 1216286 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGC 117530 | | || || || || || | | | || |||||||| || ||||| ||||| || Sbjct 1216287 CTG--ACATAACCAGCGAGTTCAACAACTTTCATGTCATTTGTAAGGTTGCGCTTGAAGC 1216344 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAAC 117590 | |||| || || || || || | ||||| ||||| || ||| ||| || |||| Sbjct 1216345 AAGCATGCATAACTTTCCGTTGTCCAGGCTTGAGACCGTCAATGACGGAAGGAATGGAAC 1216404 Query 117591 G 117591 | Sbjct 1216405 G 1216405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213838496800