Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 176 5e-39 seq1 176 5e-39 seq36 132 5e-26 seq3 131 2e-25 >seq4 Length=2737121 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| ||||| || || ||||||||||| Sbjct 1683120 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 1683061 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || |||||||||||||| || || ||||| Sbjct 1683060 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAA 1683001 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || |||||||||||||||| || ||||| | ||||| || Sbjct 1683000 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 1682941 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||||||||| |||| || ||||| || ||||| Sbjct 1682940 ATCCAAAAGGAGTCCACTCTTCACTTAGTGTTACGTCTCCGTGGTGG 1682894 >seq1 Length=2965994 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || ||||| ||||| || ||| | |||||||||||| Sbjct 1570099 ATGCAAATCTTCGTTAAGACTCTCACCGGAAAGACGATCACTTTAGAGGTTGAGTCATCG 1570040 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||||||||| ||||| ||||| ||||| ||||| || || || Sbjct 1570039 GACACCATCGACAACGTGAAGGCTAAGATTCAAGACAAAGAGGGCATTCCCCCTGATCAA 1569980 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||||||||| ||||||| || || || | ||||| || Sbjct 1569979 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTTTCCGACTACAAC 1569920 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| ||| | ||| | || | ||||| || ||||| Sbjct 1569919 ATCCAAAAAGAATCGACTTTACATTTGGTTCTTCGTCTCCGTGGTGG 1569873 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||| ||||| || || |||||||| ||||| | || | || | ||| | |||| Sbjct 1570305 TTACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATCGACAATGTCAAGG 1570246 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | || || || || |||||||||||||| || ||||| || ||| | ||||| || || | Sbjct 1570245 CCAAGATCCAAGATAAGGAGGGAATTCCCCCCGACCAACAACGTTTGATTTTCGCCGGAA 1570186 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 ||||||| ||||||| ||| ||||| | || || || | || ||||| || || || | Sbjct 1570185 AGCAACTTGAGGATGGTCGAACCCTCTCCGATTACAACATTCAGAAGGAGTCTACCCTCC 1570126 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || | | ||||| ||||| Sbjct 1570125 ACTTGGTTCTCAGACTTCGTGGTGG 1570101 Score = 109 bits (120), Expect = 6e-19 Identities = 183/263 (70%), Gaps = 9/263 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || || ||||| || || | ||||| || || Sbjct 1569871 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACATTAGAGGTAGAATCTTCA 1569812 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||||| || ||||| || |||||||| ||||| || || || Sbjct 1569811 GATACTATTGATAATGTTAAGGCCAAGATTCAAGATAAGGAGGGTATTCCACCTGATCAA 1569752 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || || || ||||| | ||||||| | || || || || || Sbjct 1569751 CAACGATTGATCTTCGCCGGAAAGCAGTTGGAGGATGGCAGAACTCTTTTGGATTACAAC 1569692 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 | ||||||||| ||| | || | || | |||||||| ||||| ||| | || || Sbjct 1569691 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTCAA--TAAATGT 1569634 Query 27646 TT----TTC---CTGCACATATA 27661 || ||| ||||||||||| Sbjct 1569633 TTTCGATTCGATCTGCACATATA 1569611 >seq36 Length=569963 Score = 132 bits (146), Expect = 5e-26 Identities = 514/800 (64%), Gaps = 11/800 (1%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || |||||||| || || ||| ||||| ||||| || ||||| Sbjct 131151 ACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTTGC 131092 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || || ||||| |||| | || | ||||||||| || | || Sbjct 131091 TCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGCCT 131032 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127 || || | || ||||| || | ||||||| |||||| || ||| | Sbjct 131031 CAAGAATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTTCCTGCCTTTT 130972 Query 81128 CATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187 |||| | |||| | ||||||| | || | || || | | | ||||| | Sbjct 130971 CATAACTCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCCAAACCAGGGCATT 130912 Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247 | || |||||||| || ||| || | || || ||| ||||||||| |||| Sbjct 130911 CATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCAACACGCTTCATGAACAAATCAG 130852 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306 | ||||| | ||| ||| || ||||| ||| || | || || | ||| ||||| | Sbjct 130851 GAATCCACAAGGCATAGAAGAGATCGCGCGCA-CGAACTTCTTCCTTACCGTGGTTTTTG 130793 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | || ||||| || | | || |||||||||||||| || || || || | || Sbjct 130792 CGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAACGCA 130733 Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 || || | ||||| || | || || | |||||| ||| || || || | | Sbjct 130732 CCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCGAAGC 130673 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483 || || | ||||||| || | ||||| ||||| |||| | || | || || Sbjct 130672 ATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTATGCACCAGTAGCACGG 130613 Query 81484 ACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTT 81542 | || ||| || ||||| || ||||| | |||||| ||| ||||| || Sbjct 130612 ATTCTG-TGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTT 130554 Query 81543 CATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGA 81602 || || || || || || || || || || | |||||||| | | ||| || ||| Sbjct 130553 CAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGA 130494 Query 81603 CATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAA 81660 | || | ||| | ||| || ||| || |||||||||| || || | || || Sbjct 130493 AAGTTGTG--CTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCATGTGTAAAGTAC 130436 Query 81661 CGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCG 81720 ||||||||||| || || ||||| | | | | ||||| |||||||||||||| Sbjct 130435 TTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCA 130376 Query 81721 ATAGCTACACGCATAAACAT 81740 | || |||||||| | ||| Sbjct 130375 ACGGCAACACGCATGATCAT 130356 >seq3 Length=2936196 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| |||||||| || || |||||||| ||||| ||| | || Sbjct 1398662 CTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTAT 1398721 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||||| || || || ||||| ||||||||||| || || || || ||| | Sbjct 1398722 CGACAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCCGATCAACAACGTTT 1398781 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| |||||||| ||||| | ||||| || |||| || || ||||||| Sbjct 1398782 GATCTTCGCTGGAAAGCAACTTGAGGACGGCCGTACTCTTTCAGATTACAACATCCAAAA 1398841 Query 27594 GG 27595 || Sbjct 1398842 GG 1398843 Score = 105 bits (116), Expect = 8e-18 Identities = 199/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || |||||||| ||| ||||| ||||||||| ||| || || || || | || Sbjct 1216405 CGTTCCATTCCTTCCGTCATTGACGGTCTCAAGCCTGGACAACGGAAAGTTATGCATGCT 1216346 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| ||||| ||||| | | ||||||||| || | | || | || || || || Sbjct 1216345 TGCTTCAAGCGCAACCTTACAAATGACATGAAAGTTGTTGAACTCGCTGGTTATGT--CA 1216288 Query 32083 GAGCAAA---CGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTT 32139 | ||| ||||||||||||| || ||||| ||| | || |||||||| ||| Sbjct 1216287 GT-CAAGTCTCGGCCTATCACCATGGTGAGGCTTCGATGCAAATGACCATTGTTGGCCTC 1216229 Query 32140 GCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGG 32199 ||||| | |||||||| | || || | |||| ||||||||| |||| | ||||| Sbjct 1216228 GCTCAAGATTTTGTCGGCTCGAACAATGTTAACTGTCTCGAGCCAAGTGGAAATTTTGGT 1216169 Query 32200 ACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | | | || || || | |||||||| ||| ||||||| || ||||| Sbjct 1216168 AGCAGACTTCAGGGAGGTAGCGATGCTGCTAGCGCCCGTTATATTTTCAC 1216119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308147273920