Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 176 1e-38 seq1 163 7e-35 seq3 129 1e-24 seq36 104 5e-17 >seq4 Length=2737121 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | || || | ||||||||||||||| ||||||||||| || || | |||||| Sbjct 1682899 ACGGAGACGTAACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 1682958 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| || |||||||| | || |||||||| || || | ||| Sbjct 1682959 GCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCC 1683018 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| ||| || || ||||||||||| || ||||||||||| Sbjct 1683019 CTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAG 1683078 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || |||||||| ||||| || || | |||||| Sbjct 1683079 GGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1683120 >seq1 Length=2965994 Score = 163 bits (180), Expect = 7e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || |||||||||||||| || || | ||| || | ||||| || || ||||| || Sbjct 1569902 AGTCGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGTTGCTTACC 1569961 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || |||||||| |||||||| ||||| |||| || || ||||| || ||||| || Sbjct 1569962 AGCAAAGATAAGACGTTGTTGATCAGGGGGAATGCCCTCTTTGTCTTGAATCTTAGCCTT 1570021 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||| ||||||||||| || |||||||| | ||||||||||||||| |||||||| Sbjct 1570022 CACGTTGTCGATGGTGTCCGATGACTCAACCTCTAAAGTGATCGTCTTTCCGGTGAGAGT 1570081 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | ||||| Sbjct 1570082 CTTAACGAAGATTTGCAT 1570099 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || || | ||| || || ||||| || || ||||| ||||| | ||||| Sbjct 1570106 ACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGGGT 1570165 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| || ||||| || | ||||||||||| || |||| ||| Sbjct 1570166 TCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGAATTCC 1570225 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || |||||||| || || || ||||| ||||| | || ||||| || Sbjct 1570226 CTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGACTCGACCTCAAG 1570285 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||||| |||||||| || Sbjct 1570286 GGTGATGGTCTTTCCGGT 1570303 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 |||||||||||||| | || |||||||||||||| ||||| | | ||||| ||||| Sbjct 123842 CCAAAGAAGCACGGTCGTGGTGGACAATCTGCTCTTCGTTTCGCGCGTCTTCGTGAGGAA 123901 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC 139929 || | ||||||||| | |||| ||||| ||| || | ||| || || | || Sbjct 123902 AAACGACACAACTACGTCCGAAAGGTTGCCGAGTTAGCTGTCCAGAACTTCATTACAGCA 123961 Query 139930 AACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTC 139989 | ||| | || |||||||| | ||||| ||||| || || ||||||| | ||| Sbjct 123962 GATAAGGTTAACGTAGCTGGTATTATCTTGGCCGGTTCTGCCGATTTCAAGAATGATCTC 124021 Query 139990 CTGGAATCTGACTTTTTTGAC 140010 | || ||||| |||||| Sbjct 124022 AACCAGTCCGACTTGTTTGAC 124042 >seq3 Length=2936196 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| ||||| | ||| || | || || || || ||||| || |||||||| Sbjct 1398841 TTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1398782 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| || || |||| ||| || ||||| |||||||| || || || ||| Sbjct 1398781 AAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGTCG 1398722 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||||||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 1398721 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1398663 >seq36 Length=569963 Score = 104 bits (114), Expect = 5e-17 Identities = 193/280 (69%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 |||| |||||||||||||||||| || ||||||||||| ||||| || || Sbjct 131110 CCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTT 131051 Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207 || ||| | ||||||| | ||||| | |||||||| || || || |||||| Sbjct 131050 CCGGTCTCGGTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTG 130991 Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267 | |||||| | || || || | | |||||| ||||||| ||| ||||| ||| Sbjct 130990 CGACCCTTTCCTGCCTTTTCATAACTCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACA 130931 Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACC-GTCTTCCTTC-A 178325 || | | ||| || ||||||||||| | ||| |||| | || |||| ||| | Sbjct 130930 TCTGCCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTT--TTCAA 130873 Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 | || |||||||| | |||| |||| | ||||||||| Sbjct 130872 CACGCTTCATGAACAAATCAGGAATCCACAAGGCATAGAA 130833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147306883340