Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 127 1e-24 seq3 93.3 3e-14 >seq4 Length=2737121 Score = 127 bits (140), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||| || || Sbjct 1683120 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 1683061 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || || ||||| || || | || || || || Sbjct 1683060 GACACCATCGACAATGTCAAAGC-CAAGATCCAAGACAAGGAGGGAATCCCACCCGACCA 1683002 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || ||||| || ||||| || || | ||||| | ||| ||||| Sbjct 1683001 ACAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAA 1682942 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| ||||| |||||||| | || ||||| ||| Sbjct 1682941 CATCCAAAAGGAGTCCACTCTTCACTTAGTGTTA 1682908 >seq3 Length=2936196 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||| ||||| || || ||||| || || || || ||| | |||||| | Sbjct 1398663 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 1398722 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| |||| | || | | |||||||| || | || || |||||||| ||||| Sbjct 1398723 GACAATGTTAAGGCCAAGA-TCCAAGACAAAGAGGGAATTCCCCCCGATCAACAACGTTT 1398781 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || || || || ||||| || |||| || ||| | ||||||||||| ||||| Sbjct 1398782 GATCTTCGCTGGAAAGCAACTTGAGGACGGCCGTACTCTTTCAGATTACAACATCCAAAA 1398841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008298240528