Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-31 seq4 129 1e-24 seq3 120 7e-22 seq23 95.1 3e-14 >seq1 Length=2965994 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||||| ||||| |||| | ||| | ||||| || || ||||| || Sbjct 1569902 AGTCGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGTTGCTTACC 1569961 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| |||||||| |||||||| || || ||||| || || |||||||| ||||| ||| Sbjct 1569962 AGCAAAGATAAGACGTTGTTGATCAGGGGGAATGCCCTCTTTGTCTTGAATCTTAGCCTT 1570021 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||||||||||| || | || || ||||| ||||||||||| || || | ||| Sbjct 1570022 CACGTTGTCGATGGTGTCCGATGACTCAACCTCTAAAGTGATCGTCTTTCCGGTGAGAGT 1570081 Query 225696 TTTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 1570082 CTTAACGAAGATTTGCAT 1570099 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||| || || | |||||| || || || || || | |||||||||| | || Sbjct 1570106 ACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGGGT 1570165 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || ||||| || ||||| || | |||||||||||||| ||||| || Sbjct 1570166 TCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGAATTCC 1570225 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||||||||| ||| ||| ||||| ||||| || || || || | Sbjct 1570226 CTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGACTCGACCTCAAG 1570285 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 1570286 GGTGATGGTCTTTCCGGT 1570303 >seq4 Length=2737121 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| |||||||| || ||||||| ||||| |||| | || | ||||| || || || Sbjct 1682917 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTG 1682976 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| | ||| ||||||||||| || || || ||||||||||||||||| Sbjct 1682977 CTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATCTT 1683036 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||||||||||| || | || || || | ||||| || |||||||| Sbjct 1683037 GGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGTTTTGCCCGT 1683096 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | ||||| Sbjct 1683097 GAGGGTCTTGACGAAGATCTGCAT 1683120 >seq3 Length=2936196 Score = 120 bits (132), Expect = 7e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| |||||||| | | ||| | || || || || ||||| ||||||||||| Sbjct 1398841 TTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1398782 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | |||||||| ||||| ||||| || || |||||||||||||| ||| ||| ||| Sbjct 1398781 AAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGTCG 1398722 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| |||| || || || | ||||| ||||||||||| Sbjct 1398721 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 1398678 >seq23 Length=880955 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| |||||||||||||| ||||| || || |||||||||||||| |||||||| Sbjct 794342 GAAAATTTGTCCATCAGTAATAGAAATAACGTTAGTTGGGATATAAGCAGACACATCACC 794401 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| || || | | || ||||| || | ||||||||||| Sbjct 794402 ACCTTGGGTCTCAATGATGGGCAAGGCGGTCAAAGATCCACCACC 794446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526371739304