Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq36 376 3e-99 seq9 87.8 2e-12 >seq36 Length=569963 Score = 376 bits (416), Expect = 3e-99 Identities = 1352/2087 (65%), Gaps = 68/2087 (3%) Strand=Plus/Minus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | ||||| |||||||| | || || | | ||||||| ||||||||| Sbjct 132116 TTCTTGATCGACGGTAAATTGAATTGGTGCTGAGGCAGCCATAGTACGTAAATAGTACAT 132057 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || | ||||| ||||||| |||||||| ||| | ||| | Sbjct 132056 TCCGGTCTTCAAACCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTTGCCCATTGT 131997 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 |||||| || ||||| ||||| || ||| ||||||||| || || || | |||||| Sbjct 131996 AGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGC 131937 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||||| | ||| || ||||| ||||||||||| ||| ||| ||| |||||| Sbjct 131936 AGCCATTTGAACAATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCTTTGAT 131877 Query 77009 ATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| |||||| ||| | | |||||||| || |||||||| | || || ||||| Sbjct 131876 GTCAGCTGGAATGTTGGGGATGTTTTGAATCGATCCACCATCGGCAATGATACGGTTCTT 131817 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | ||| ||| | | | || | || | ||||| || ||||| | Sbjct 131816 CATGTTGTCAGACCAGAGACCCATATCCACAAGGTCTTTGAGGAGCCATGGGTTAACAAC 131757 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| |||||||||| | || | ||| | ||| || || ||||||||||| | | | Sbjct 131756 TTGGAATTCTCCAGCTAGAACACGACGTGAGTAGATGTTTGAAGTATATGGTTCGAAACA 131697 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 ||| ||| || | ||||| | |||| |||||| ||||||||||| || | | Sbjct 131696 TTCGTTGAAACCGAGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCAACGAGAAGGGA 131637 Query 77246 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 77305 || | | || ||| |||| | || | | | | ||||||||| | ||| || Sbjct 131636 GTTGCGAATTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGA 131577 Query 77306 AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTT----ACTAGCATATGATCCAT 77361 ||| || |||| | || ||||| || || || ||| | || || | Sbjct 131576 AGGGGTGACGCCCCACATGTCATATTGGAGTTCACCCTTGGAGACTGGG----GAGCCTT 131521 Query 77362 TATATGTTTCATAAGGTCC---TTCTGTTTCAG-CTAGTTCACAACTCGCTTCCAATGCT 77417 ||| ||||| || || || ||| || || || | ||| | || || || Sbjct 131520 GATAGGTTTCGTACGGGCCAAGTTCCTTTGCAATCTCG---ACAGATGAGGTC-AAGGCA 131465 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAA 77476 ||| ||||| || |||||||||| | ||||| | |||| ||||| |||||| Sbjct 131464 GCGTGGTAAATGGTCTCGAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAATCAAA 131406 Query 77477 CGGATAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 ||| | | || || || |||| |||| || | || ||||| |||| | | |||||| Sbjct 131405 TGGAAGACG-AAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACCAACAGCGATAGGT 131348 Query 77535 CTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATT 77594 | || | |||| || | |||||| | | |||||||| || || || || || Sbjct 131347 CGGTGACGGAAATTGCTCTTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATC 131288 Query 77595 TTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTT 77654 || || | |||||||| || |||| || || || | || || | |||||| | || Sbjct 131287 TTGTTCAAGTTTCTAACGACAACTTGGACGACCTCGTGAAGCTTTTGGAAATCATAAGTT 131228 Query 77655 CCATCTATAAC-------AAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTAC 77707 || || | | ||| || | | ||| || || || | ||||| || || Sbjct 131227 CCCTCATTCATGTTGACGAAAGTTGGT-AGAGCAATTGAAGCCAAGTTACAGCAAGCAAC 131169 Query 77708 CTCATTAGCGTTGGCA---TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGT 77764 ||||| | || ||| || | | ||||| || || | || | ||||| Sbjct 131168 CTCATCTG-GT--GCAGAGTACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGT 131112 Query 77765 GCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGT 77824 || || || | |||||||||||| || ||||||| || || ||||| || || ||| | Sbjct 131111 ACCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATT 131052 Query 77825 CCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGA 77884 ||||| || | || | || | |||||| | ||| | | ||| || || || Sbjct 131051 TCCGGTCTCGGTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGT 130995 Query 77885 TTTGTATCGCCTCTCTC------TTTCATA--TTGAGTATATAGCCGTTCAAATTCATCT 77936 ||| || | || || ||||||| | ||| | |||| || || || || Sbjct 130994 CTTG---CGACCCTTTCCTGCCTTTTCATAACTCTCGTAGAGAGCC--TCGAACTCCTCG 130940 Query 77937 CCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCT 77996 || ||||||| |||| |||||||||||||| |||||||| | | ||| || |||| Sbjct 130939 CCATAAACATCTGCCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTC 130880 Query 77997 TCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 78056 | | ||| || ||||| || | |||||| ||||| | ||| || ||||| || | Sbjct 130879 TTTTCAACACGCTTCATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGCGCGCA 130820 Query 78057 CTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGC 78116 | | |||||| || || || || ||||| |||||||| | || ||| | |||| Sbjct 130819 CGAACTTCTTCCTTACCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGC 130760 Query 78117 CATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATAT 78176 ||||| || || || | || | | ||||| ||||| ||||| || ||||| | |||| Sbjct 130759 CATGGCTCAAGGTAAACAGCAAACGCACCAGGACGTTTGTTACCACCTTGATCAACATAT 130700 Query 78177 CTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTT 78236 ||||| ||||| || |||||| | ||| |||| |||||| || || |||| || || Sbjct 130699 CTGGCAGTGTTGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTA 130640 Query 78237 CCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCC 78296 || | || || ||| | || || || | |||| | || || || || || Sbjct 130639 CCGGCGATGTATGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCA 130580 Query 78297 ATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC 78356 |||| || || | || ||| ||||| |||||||||||||| || |||||||| ||| Sbjct 130579 TTCTTTGAGATCATGGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCC 130520 Query 78357 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAAT 78416 |||||| | || || || || | ||| || ||| || ||| ||| | | Sbjct 130519 TTCATGTCGATGAGGAAGCAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGT 130460 Query 78417 GTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGAT 78476 || || || ||||| ||||| | || | || | | ||||||||||| ||||| | Sbjct 130459 GTTGGGGAAGCATGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTT 130400 Query 78477 TCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || || || | ||||| || || || |||||||| | ||| || ||||| | ||| Sbjct 130399 TCGATATCATCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTC 130341 Query 78536 AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 78595 | || || | || | |||||| || | || ||||| || || || Sbjct 130340 CGCAACTTTGCCATCAAGACGTAAAAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTA 130281 Query 78596 GTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTG 78653 | ||| ||||| || || || || | |||| |||| || |||| || | | | | Sbjct 130280 TTGGTAGTTGAAA--TCCCTGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTC 130223 Query 78654 GTAACAATATCCATGACAG--TAGTTG-AAATAATAGGAGATCGTACACCATTTTTAGGA 78710 | || || || || | ||| ||| ||||||||| | |||||||| || Sbjct 130222 ATGACGCATTC---GAAAGTTTCCTTGCTAATCATAGGAGATGCTTTGCCATTTTTTGGG 130166 Query 78711 TTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGT 78770 || ||| | ||||||| || || | ||| |||| || |||| ||||| Sbjct 130165 TTTGTATATTGGTATAAATCGCGGATAACGTGGGAGAATTGTTTCTTGGTTTGTTTGTGG 130106 Query 78771 AGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 || || || || || || | ||||||||||| |||||||| ||||| Sbjct 130105 AGGTTTGACACTGCAATACGAGCAGCTAGAATGGCATAATCGGGATG 130059 >seq9 Length=1448665 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 ||||| ||||| || |||||||| || | || | |||||| || || ||||| Sbjct 448730 CATGCGAAATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 448671 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || | ||| || ||||| || |||||||| || || | |||||||||||||| ||||| Sbjct 448670 CCAGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAG 448611 Query 48261 ATGCCTTCTACGGCCGCAAATGC 48283 || || || || || || ||||| Sbjct 448610 ATACCCTCAACAGCGGCGAATGC 448588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666056058240