Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq36 342 7e-89 seq9 102 1e-16 >seq36 Length=569963 Score = 342 bits (378), Expect = 7e-89 Identities = 1338/2080 (64%), Gaps = 54/2080 (3%) Strand=Plus/Minus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | || || ||||| || | || || | | ||||||| ||||||||| Sbjct 132116 TTCTTGATCGACGGTAAATTGAATTGGTGCTGAGGCAGCCATAGTACGTAAATAGTACAT 132057 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || | ||||| ||||||| |||||||| ||| | ||| | Sbjct 132056 TCCGGTCTTCAAACCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTTGCCCATTGT 131997 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 ||||| || ||||| ||||| || ||| ||||||||| || || || | |||||| Sbjct 131996 AGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGC 131937 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||||| | ||| || ||||| ||||||||||| ||| ||| ||| |||||| Sbjct 131936 AGCCATTTGAACAATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCTTTGAT 131877 Query 75604 ATCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| |||||| || | | |||||||| ||||| ||||| | || || ||||| Sbjct 131876 GTCAGCTGGAATGTTGGGGATGTTTTGAATCGATCCACCATCGGCAATGATACGGTTCTT 131817 Query 75661 GATCTCATCATTCCACA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 || | ||| ||| | || | | | ||| || | ||||| || ||| Sbjct 131816 CATGTTGTCAGACCAGAGACCCATATCCACAAGGT-----CTTTGAGGAGCCATGGGTTA 131762 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 |||| ||| |||||||||| | || | || | ||| || || ||||||||||| Sbjct 131761 ACAACTTGGAATTCTCCAGCTAGAACACGACGTGAGTAGATGTTTGAAGTATATGGTTCG 131702 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | | |||| ||| || | ||||| | ||| |||||| ||||||||||| || | Sbjct 131701 AAACATTCGTTGAAACCGAGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCAACGAGA 131642 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || | | || ||| |||| | || | | | | ||||||||| | | Sbjct 131641 AGGGAGTTGCGAATTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAA 131582 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || || || || |||| | || ||||| || || ||| | || || Sbjct 131581 TCAGAAGGGGTGACGCCCCACATGTCATATTGGAGTTCACCCTTGGAGACTGGGGAGCCT 131522 Query 75956 TTATATGTTTCGTAAGTCCC--GTCCTTTTCAGCTAGTTCG-CAACTCGCCTCTAACGCA 76012 | ||| |||||||| | || || | ||| || | ||| || | || || ||| Sbjct 131521 TGATAGGTTTCGTACGGGCCAAGTTCCTTT--GCAATCTCGACAGATGAGGTC-AAGGCA 131465 Query 76013 CCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAA 76071 ||| ||||| || |||||||||| | || || | |||| ||||| | |||||| Sbjct 131464 GCGTGGTAAATGGTCTCGAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAATCAAA 131406 Query 76072 AGGATAATGTAAAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 ||| | | || || || ||| ||||| || || || ||||| |||| | | |||||| Sbjct 131405 TGGAAGACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGT 131348 Query 76130 CTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATT 76189 | || | |||| || |||||| | | || ||||| || ||||| || || Sbjct 131347 CGGTGACGGAAATTGCTCTTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATC 131288 Query 76190 TTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTT 76249 || || | ||||| || || |||| || || || | || || | |||||| | || Sbjct 131287 TTGTTCAAGTTTCTAACGACAACTTGGACGACCTCGTGAAGCTTTTGGAAATCATAAGTT 131228 Query 76250 CCATCTATCA------CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACC 76303 || || ||| | || | ||||| || || || | ||||| || ||| Sbjct 131227 CCCTCATTCATGTTGACGAAAGTTGGTAGAGCAATTGAAGCCAAGTTACAGCAAGCAACC 131168 Query 76304 TCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCA 76363 |||| | | || | | ||||| ||||| | || | ||||| ||| Sbjct 131167 TCATCTGGTGCAGAGTACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCA 131108 Query 76364 AGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCA 76423 || || | |||||||||||| ||||| |||| || || ||||| | || ||| |||| Sbjct 131107 AGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCG 131048 Query 76424 GTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTG 76483 || || | || | || | |||||| | ||| | | ||| || || || ||| Sbjct 131047 GTCTCGGTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTG 130991 Query 76484 TATCGCTTCTCTC---TTTCATAT-TGT-GTATATAACCGTTCAAATTCATCTCCCCAAA 76538 | ||| || ||||||| | | ||| | | || || || || || || ||| Sbjct 130990 CGACCCTTTCCTGCCTTTTCATAACTCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAA 130933 Query 76539 CATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAA 76598 |||| |||||||||| |||||||| || ||||| | | ||| || |||| | | || Sbjct 130932 CATCTGCCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCAA 130873 Query 76599 CCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTT 76658 | || ||||| || | |||||| ||||| | ||| || ||||| || | | | || Sbjct 130872 CACGCTTCATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGCGCGCACGAACTT 130813 Query 76659 CTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTT 76718 |||| || || || || ||||| || ||||| | || ||| | ||||||||| | Sbjct 130812 CTTCCTTACCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCT 130753 Query 76719 CTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAG 76778 | || || | || | |||| || ||||| ||||| || ||||| | ||||||||||| Sbjct 130752 CAAGGTAAACAGCAAACGCACCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAG 130693 Query 76779 TGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAA 76838 |||| || |||||| | ||| |||| ||| || || || | || || || || | | Sbjct 130692 TGTTGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGA 130633 Query 76839 TATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAG 76898 | || ||| ||||| || | ||| || || || || || || | || | Sbjct 130632 TGTATGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTG 130573 Query 76899 AGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958 |||| | ||||| ||||| || || ||||| || || ||||| || ||| |||||| Sbjct 130572 AGATCATGGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGT 130513 Query 76959 TAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAG 77018 | || || || || | ||| || ||| || ||| ||| | ||| || | Sbjct 130512 CGATGAGGAAGCAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGG 130453 Query 77019 ATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATAT 77078 | ||||| || || | || | || | | ||||||||||| ||| | ||| |||| Sbjct 130452 AAGCATGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATAT 130393 Query 77079 C-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTC 77137 | || | ||||| || || || |||||||| | ||| || ||||| ||||| || Sbjct 130392 CATCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACT 130334 Query 77138 TTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 77196 || || | || | |||||| || | || ||||| || || || | ||| Sbjct 130333 TTGCCATCAAGACGTAAAAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTATTGGTAG 130274 Query 77197 -TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAA 77255 ||||| || || || || | |||| | || || |||| |||| || | | | || Sbjct 130273 TTGAAA--TCCCTGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGC 130216 Query 77256 TATCCATGACAGT---GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACAT 77312 || || ||| | ||| || |||||| | | |||||||| || || || Sbjct 130215 ATTC---GAAAGTTTCCTTGCTAATCATAGGAGATGCTTTGCCATTTTTTGGGTTTGTAT 130159 Query 77313 AGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCG 77372 | | |||| || || |||| | ||| |||| || |||| ||||| || || | Sbjct 130158 ATTGGTATAAATCGCGGATAACGTGGGAGAATTGTTTCTTGGTTTGTTTGTGGAGGTTTG 130099 Query 77373 ATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 | || || || | |||||||||||| ||||| || ||||| Sbjct 130098 ACACTGCAATACGAGCAGCTAGAATGGCATAATCGGGATG 130059 >seq9 Length=1448665 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 ||||| ||||| || || ||||| || | || | |||||| || || ||||| Sbjct 448730 CATGCGAAATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 448671 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||| ||| || |||||||| |||||||| || || | |||||||||||||| ||||| Sbjct 448670 CCAGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAG 448611 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAG 46778 || || || ||||| |||||||| || || Sbjct 448610 ATACCCTCAACAGCGGCGAATGCAACGAG 448582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931583909120