Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4 127 1e-24 seq1 105 5e-18 seq3 93.3 3e-14 >seq4 Length=2737121 Score = 127 bits (140), Expect = 1e-24 Identities = 160/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 ||||| | |||||| ||| |||||||||||||||||| |||| || ||| | || Sbjct 1682909 AACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 1682968 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || || ||||| ||||| |||||||| ||||| || || | || | || ||||| || Sbjct 1682969 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTTGTCT 1683028 Query 44246 GTTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||||| |||| || ||| | |||||||| | || || ||||| | || || Sbjct 1683029 TGGATCTT-GGCTTTGACATTGT--CGATGGTGTCCGAAGACTCAACCTCGAGGGTGATA 1683085 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 || || |||||||||||||| |||||||| ||||||| Sbjct 1683086 GTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 1683122 >seq1 Length=2965994 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||||||||| |||| || ||| | || || || ||||| || |||||| Sbjct 1569909 TCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAG 1569968 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || ||||| | || | || || || || ||||| ||||| | Sbjct 1569969 ATAAGACGTTGTTGATCAGGGGGAATGCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTG 1570028 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | || || ||||| | || ||||||||||| ||||| ||||| ||| Sbjct 1570029 TCGATGGTGTCCGATGACTCAACCTCTAAAGTGATCGTCTTTCCGGTGAGAGTCTTAACG 1570088 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 1570089 AAGATTTGCAT 1570099 Score = 102 bits (112), Expect = 6e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||| | ||||| |||||||| ||||||||||| ||||| || | || Sbjct 1569662 CACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGTTCT-GC-CATCC 1569719 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| ||||| |||||||| || || ||||| | || | ||| ||||| || Sbjct 1569720 TCCAACTGCTTTCCGGCGAAGATCAATCGTTGTTGATCAGGTGGAATACCCTCCTTATCT 1569779 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | | | || || || | ||||| ||||| | || || ||| Sbjct 1569780 TGAATCTTGGCCTTAACATTATCAATAGTATCTGAAGATTCTACCTCTAATGTGATGGTC 1569839 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | |||||| || ||||||||||| Sbjct 1569840 TTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1569871 >seq3 Length=2936196 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||||||||| | || || |||| || || ||||| || || |||| Sbjct 1398843 CCTTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGA 1398784 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || ||||| | || | || || || || ||||| ||| || ||| Sbjct 1398783 TCAAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGT 1398724 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | || || ||||| ||||| |||||||| || Sbjct 1398723 --CGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 1398666 Query 44326 GAAG 44329 |||| Sbjct 1398665 GAAG 1398662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989013586972