Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amanita_20bisporigera_20[genbank_20GCA_5F001983365.1_202017-02-02] 10,390 sequences; 75,346,262 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4003 109 1e-18 seq6550 95.1 2e-14 >seq4003 Length=18687 Score = 109 bits (120), Expect = 1e-18 Identities = 279/430 (65%), Gaps = 2/430 (0%) Strand=Plus/Plus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| || ||||| || || || |||||||| | ||| || ||||| | | || || Sbjct 12059 ACAAGCGAAATCGGTGTGCAACCCCTCGTCACGGCTTATCAACTCATTGGAATAGGTCAA 12118 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 || ||||| | || ||||| || | ||| || ||||| ||||| | ||||||||| Sbjct 12119 ACCGGGCATGAGGCCCCTCTTCTTGATCCAGAAAATTGACGCAAATGATCCAGAAAAGAA 12178 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 50002 |||||||| ||| || || || | | ||| | |||| || | | ||| | Sbjct 12179 AATACCCTCAACAGCAGCGAAAGCGACGAGTCTCTCCGCAAAGGTTGACTCTCTATCAGA 12238 Query 50003 TATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 50062 |||||| | ||||||||||| || |||||||| | |||||| || ||||| | Sbjct 12239 TATCCATCGCAGTGCCCAATCTGCCTTCCTTTTGATACATGGTATAGAATCCATAGCGGT 12298 Query 50063 AAATAATTCAtt-tttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACA 50121 ||| || |||| |||||| | ||||| | |||||| Sbjct 12299 AAACAA-GCATTGTTTTTCTTGCGGATCCTTAATGTAGGTGTCAATTAAAAGAGAATAGG 12357 Query 50122 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAAT 50181 |||| || || ||| |||||| ||||| ||| ||| || || |||||| | Sbjct 12358 TTTCCGAGTGCACATTTTCCATCATAATTTGGAATCCATAGAAGCATCGTGCTTCGGCTA 12417 Query 50182 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 50241 || ||||| | |||||||||| || | ||| || ||||| ||||| ||||||| Sbjct 12418 TTTGGACTTCACATGAGAATCGTTCTACCAGATTTTCGTTGACAATGCCATCGGATGCTG 12477 Query 50242 CGAAGAATGC 50251 | || || || Sbjct 12478 CAAAAAAAGC 12487 >seq6550 Length=14069 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||||| ||||||||||| | | ||| |||||||||||||| ||||| | Sbjct 9312 CATCCTCTAGCTGTTTCCCAGCAAAGATCAGACGCTGCTGATCAGGTGGTATCCCTTCCT 9253 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || || ||||| || | || || ||||| |||||||| || | Sbjct 9252 TATCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGATTCGACTTCTAGCGTGA 9193 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || || || | ||||| | || |||||||| Sbjct 9192 TGGTCTTCCCTGTCAGCGTTTTGACGAAAATCTGCAT 9156 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| || | || || |||| |||| |||||| ||||||||||| | | | Sbjct 9109 ATATTGTAATCCGACAGGGTACGACCATCTTCCAGTTGTTTTCCAGCAAAGATGAGGCGC 9050 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || |||||||| || || ||||| || ||||| || | Sbjct 9049 TGCTGGTCCGGTGGGATACCTTCTTTGTCCTGAATTTTCGCCTTCACATTGTCGATGGTG 8990 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || || || || ||||| || || || | || || | ||| || ||| Sbjct 8989 TCAGAAGACTCCACCTCCAGCGTGATGGTCTTGCCCGTAAGCGTCTTCACAAAAATTTGC 8930 Query 192535 AT 192536 || Sbjct 8929 AT 8928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984348944176500