Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12 104 5e-17 seq1 84.2 5e-11 >seq12 Length=785499 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||||| | || ||| | |||||||| || || || |||||||| | Sbjct 745495 CTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTG 745436 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || ||||||| | ||||| || | |||||||| | ||||||||| Sbjct 745435 CTCGTCGCCCTCGGCAACGAGAAGATTTACAAGTCGACCAACCCCTTCGACTTTATGGAG 745376 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 | || ||||| || || ||| ||||||||||||| Sbjct 745375 ATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGA 745341 >seq1 Length=5410471 Score = 84.2 bits (92), Expect = 5e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 165601 CTCGCCATAGCTCAGTTGGAAGAGCACCGGACTGTAAATGAAAAC-ACATTAATCCGTAG 165659 ||| | ||||||||||||| ||||| ||||||||||| || |||| ||| |||||| | Sbjct 2231929 CTCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTAACTGCAAACTTCAT--ATCCGTCG 2231986 Query 165660 GTCCCCCGTTCGAACCGGGGTGGCGAGAAG 165689 |||||| ||||||| | |||| | |||||| Sbjct 2231987 GTCCCCTGTTCGAATCAGGGTTGGGAGAAG 2232016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823783146080