Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq12 102 7e-17 seq3 86.0 5e-12 >seq12 Length=785499 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| |||||||| |||||||| ||||||| ||||| || ||||||| ||||| ||||| Sbjct 767333 AGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCC 767274 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| |||| || | ||||||||| ||| | ||| |||||||| |||||| || Sbjct 767273 CGCGAAAATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 767214 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || | | | | || || || ||| || | ||| |||||||||||||| Sbjct 767213 GACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 767160 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| |||||||| || ||||| ||||||| ||||| || ||||||| ||||| ||||| Sbjct 767608 AGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCC 767549 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| || | ||||||||| ||| | ||| |||||||| |||||| || Sbjct 767548 GGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 767489 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||| | | ||| || ||| | |||| || | || |||||||||||||| Sbjct 767488 CACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGT 767435 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | |||| || |||||||| |||||||| ||||||| | Sbjct 768093 CCACCGCGCAGACGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAC 768034 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| || || ||| | || || | ||||||||| || Sbjct 768033 AGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 767974 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | ||| Sbjct 767973 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 767914 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||||||||| | || ||||| || || ||||| Sbjct 767913 TCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||||||||| || ||||| ||||| | ||| || || | ||||| ||||| || || Sbjct 767836 AGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTTCC 767777 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || | || || | ||||||||| || | ||| |||||||| ||||| || Sbjct 767776 GGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTT 767717 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| ||| || || ||| ||||| ||||||||||| ||||| | || Sbjct 767716 GACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTCTTTCCGGTGAGAGT 767657 Query 21158 TTTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 767656 CTTGACGAAAATCTGCAT 767639 >seq3 Length=2410059 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868 |||||||| ||||| |||||||| ||||| ||||||||||| || ||||| ||| | Sbjct 1169727 ACGTTGCCGAGGTCACCGACGTGACGCTCGGCGGCGTCGGGAGCTCCGTGGTTCTTGTTC 1169786 Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928 ||||||| | || | |||||||| | |||||| ||| ||| ||||| ||||| Sbjct 1169787 TGGGGGTTATAATGGGCCCCAGCGGAGGCACAGCCGCCGCTCAAGTCACCGAAAGCGTGC 1169846 Query 23929 ACGTG 23933 || || Sbjct 1169847 ACCTG 1169851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259117659456