Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12 219 4e-52 seq1 143 3e-29 >seq12 Length=785499 Score = 219 bits (242), Expect = 4e-52 Identities = 395/571 (69%), Gaps = 20/571 (4%) Strand=Plus/Minus Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC----GTG---- 116920 || ||||||| | |||||||| | || || ||| |||||||| ||| ||| Sbjct 745928 CAGGGAGAACATTCACTCGGAGACCTACTCTCTCCTTATCGACACCTACATCCGTGACAA 745869 Query 116921 CGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAA 116980 ||||| ||| || | ||| || || || |||||||| || || ||| |||| Sbjct 745868 CGCTCGTCGTC--AGTACCTC------TTCAAAGCTATCGAGACCATCCCCTGCATCAAG 745817 Query 116981 GAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCG 117039 |||||||||| ||||| || || |||||| | | | || || || |||| | ||||| Sbjct 745816 AAGAAGGCCGACTGGGCTCTTCGTTGGATCTCGGAC-GACAGCTCGTCCTTTGCGGAGCG 745758 Query 117040 CCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATT 117099 || | ||||| || ||||| ||||| ||||||| || || || ||| |||| || Sbjct 745757 TCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCGTTTGCCTCCATCTT 745698 Query 117100 TTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAG 117159 ||||||||||| || ||||||||||| ||||| || ||| ||||||||||||||| | Sbjct 745697 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCTCG 745638 Query 117160 GGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC 117219 ||||||||||| || ||||||||| ||| | || |||| || || || || || Sbjct 745637 TGACGAGGGTCTCCACACCGACTTTGCTTGTCTCCTCTTCACCCACCTGAAGCGTCGCCC 745578 Query 117220 GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCT 117279 | | | | | | | ||||| || ||| || ||| || |||||| ||||| Sbjct 745577 CCACCCCGACCTCATTGAGAAGATCATCCGCGAGGCCGTCAAGATTGAGCAGGAGTTCCT 745518 Query 117280 CACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338 |||||| || || || ||| ||| | || | || || || | |||| || |||| Sbjct 745517 CACCGAGGCTCTCCCCGTGTCTCTCATCGGCATGAA-CGCCAACCTCATGTGCCAGTACA 745459 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 | ||||| ||||||||| | ||||| ||| || | | || ||| ||||| || Sbjct 745458 TTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAAGATTTACAAGTCGA 745399 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||||| | ||||||||| | | ||||| Sbjct 745398 CCAACCCCTTCGACTTTATGGAGATGATCTC 745368 Score = 131 bits (144), Expect = 2e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || ||||| ||||||||| |||| ||||| || | |||| | | | |||| |||| Sbjct 767157 CTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACG-TCAA 767215 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| |||||||||||| | |||||||| || ||||| | |||||| Sbjct 767216 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATTTTCGCGGG 767275 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| || ||||| ||||||||||| ||||||||| | || || Sbjct 767276 CAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATTCAGAAGGAGTCTACTCT 767335 Query 40890 GCATCTAGT 40898 || || || Sbjct 767336 CCACCTCGT 767344 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || || || |||| ||||| | || Sbjct 768095 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 768154 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| |||||||| || | ||||| Sbjct 768155 GACACCATCGACAACG-TTAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 768213 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| || || || |||||||| Sbjct 768214 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAA 768273 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 768274 CATCCAGAAGGAGTCGACCCTCCACCTCGT 768303 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||| || | || || || || || Sbjct 767639 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACCATTACTCTGGAAGTTGAGTCCTCC 767698 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| |||||||| || | ||||| Sbjct 767699 GACACTATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 767757 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||||| || || | || || || ||||||||| Sbjct 767758 GCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAA 767817 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 767818 CATCCAGAAGGAGTCCACTCTTCACCTCGT 767847 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || ||||| | | Sbjct 767867 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAGGTCGAGTCGTCG 767926 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 767927 GACACCATCGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 767985 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||||| || |||| ||||| || |||||||| Sbjct 767986 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAA 768045 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || ||||| || || Sbjct 768046 CATTCAGAAGGAGTCGACCCTGCACCTTGT 768075 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 || || ||||| |||||||| | || || || | | |||| | | | | | ||| Sbjct 767432 CTTACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCTGACACCATCGACAATGTGAAG 767491 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || || | ||||| |||||||| ||| | |||||||| || ||||| | ||| ||| Sbjct 767492 GCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATTTTCGCCGGC 767551 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| || ||||| ||||||||||||||||||||| | || || Sbjct 767552 AAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTCTC 767611 Query 40891 CATCTAGT 40898 || || || Sbjct 767612 CACCTCGT 767619 >seq1 Length=5410471 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCA 40760 || || || ||||||||||| || |||||| |||| || || | |||||| | | | Sbjct 4378498 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 4378557 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 4378558 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCAT 4378616 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| ||||| || |||| |||||||| |||||||||||||||||||| Sbjct 4378617 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 4378676 Query 40881 GGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | | || || || || || | ||| || | || || Sbjct 4378677 GTCGACCCTCCACCTCGTCCTCCGCCTGCGTGGTGG 4378712 Score = 138 bits (152), Expect = 1e-27 Identities = 121/151 (80%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || ||| |||||||||| ||||||| ||||| || |||||||| || |||||| Sbjct 364532 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTGGCTC 364591 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 || || ||||| || |||| ||||||||| ||| |||||||||||||||| | |||||| Sbjct 364592 AAAAAGCGCGGGCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 364651 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 || || || ||||||||| ||| |||||| Sbjct 364652 GGCCTCCACACCGACTTTGCATGTCTGCTGT 364682 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 139368 CGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGA---CGCGAGCAACGGGTGCA 139424 ||| |||| |||||| ||||| ||||||||||||||||| | || || | || ||| Sbjct 2989172 CGCCCGGCAAGCACGGTTTCCATGTGCACGAGTTCGGCGACATCTCGGGCGAGGGCTGCC 2989113 Query 139425 CGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGA 139484 | ||||||| ||||| ||||| ||||||||||||||| || | ||| Sbjct 2989112 TCGCTGCCGGCGGCCACTTTAACCCGTACAAGAAGGACCACGGCGCGCCGACCGACAAGA 2989053 Query 139485 TCAGGCACGTCGGCGACCTGGGCAAC 139510 || | ||||| || ||||| |||||| Sbjct 2989052 TCCGCCACGTTGGTGACCTCGGCAAC 2989027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219096956160