Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq12 134 1e-26 seq1 95.1 1e-14 seq7 91.5 1e-13 >seq12 Length=785499 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || || || || ||||| ||||| Sbjct 768298 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTG 768239 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||||||||||||||| || ||||| |||||||||||||| ||| || Sbjct 768238 CTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 768179 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | |||| |||||| | ||||||||||| || | ||| ||||| || Sbjct 768178 CGCCTTAACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCCGT 768119 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 768118 GAGGGTCTTAACGAAGATCTGCAT 768095 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||| || |||||||||||| ||||| Sbjct 767835 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTTCCG 767776 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || |||||||| |||||||| |||||||||||||| ||| || || Sbjct 767775 GCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 767716 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | | ||| || || | || | || || ||||| ||||| Sbjct 767715 ACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTCTTTCCGGTGAGAGTC 767656 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 767655 TTGACGAAAATCTGCAT 767639 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || || ||||| ||||||||||| || ||| Sbjct 768063 GTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTACCA 768004 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || |||||||| || ||||| |||||||||||||| || || || Sbjct 768003 GCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTG 767944 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| ||||||||| | || | ||| |||||||| ||||| Sbjct 767943 ACGTTGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTCTTGCCGGTGAGAGTC 767884 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 767883 TTGACGAAGATCTGCAT 767867 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || ||||||||||| || | || || ||||||||||| Sbjct 767339 GTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTG 767280 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | |||||||||||||| ||||| || |||||||||||||| || || Sbjct 767279 CTTGCCCGCGAAAATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 767220 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||||| | ||||||||||| ||| | || |||||||| Sbjct 767219 GGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 767160 Query 118715 CAG 118717 || Sbjct 767159 AAG 767157 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| || | || || ||||||||||| Sbjct 767614 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTG 767555 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | |||||||||||||| ||||| || |||||||||||||| || || Sbjct 767554 CTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 767495 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| ||||| | || | || |||||||| Sbjct 767494 GGCCTTCACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGT 767435 Query 118715 CAG 118717 || Sbjct 767434 AAG 767432 >seq1 Length=5410471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 4378689 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 4378630 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| ||||||| |||||||| || || || |||||||||||||| || || Sbjct 4378629 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 4378570 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| ||||||| ||| | || ||||| || Sbjct 4378569 GGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 4378510 Query 118715 CAGAGTTTTTAC 118726 || || || || Sbjct 4378509 GAGGGTCTTGAC 4378498 >seq7 Length=1006632 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| |||||||||||||||| ||||| || || ||||||||| Sbjct 519776 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTG 519717 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| |||||||| ||| ||||| | ||| | Sbjct 519716 TCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATG 519657 Query 118704 GTTTTGCCGGTCAGAGTTTTTAC 118726 || |||||||| || || || || Sbjct 519656 GTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830315403072