Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq12 125 5e-24 seq1 100 2e-16 seq7 84.2 1e-11 >seq12 Length=785499 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | || || ||||| ||||||||||| ||| Sbjct 768093 CCACCGCGCAGACGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAC 768034 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | |||||| || || || || || ||||||||||| || Sbjct 768033 AGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 767974 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | ||| ||||| Sbjct 767973 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 767914 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || |||||||||||||| || || ||||||||||| Sbjct 767913 TCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| || ||||| ||||||||||||||| Sbjct 767865 CCACCGCGGAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 767806 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | |||||| || ||||| || || |||||||||||| || Sbjct 767805 AGAGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGA 767746 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| || || || Sbjct 767745 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACT 767686 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || ||||||||||| || || || |||||||| Sbjct 767685 TCCAGAGTAATGGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Score = 120 bits (132), Expect = 2e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | |||| || ||||| ||||||||||| || Sbjct 767637 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 767578 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | ||||||||| ||||||||||| |||||||||||| ||| Sbjct 767577 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGA 767518 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 767517 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTCCACC 767458 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368 || | |||||||| |||||||| || Sbjct 767457 TCAAGAGTGATGGTCTTGCCGGTAAG 767432 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | || || ||||| ||||||||||| ||| Sbjct 768321 CCTCCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 768262 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | |||||| || ||||| ||||| ||||||||||| || Sbjct 768261 AGCGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 768202 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| ||| ||||| Sbjct 768201 ATGCCCTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACGACTCGACC 768142 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||| ||||| || || || ||||||||||| Sbjct 768141 TCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | |||| || ||||| ||||||||||| || || |||| |||| Sbjct 767347 AGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767288 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||||||||| |||||||||||| ||| | || ||||||||| Sbjct 767287 TCGAGCTGCTTGCCCGCGAAAATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 767228 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || ||||| || | |||||||| Sbjct 767227 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 767168 Query 34358 TTGCCGGTGAG 34368 |||||||| || Sbjct 767167 TTGCCGGTAAG 767157 >seq1 Length=5410471 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | || || ||||| ||||||||||| || Sbjct 4378712 CCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 4378653 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 4378652 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 4378593 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| ||| || || Sbjct 4378592 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACC 4378533 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | ||||| || ||||| ||||| || || || Sbjct 4378532 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 4378498 >seq7 Length=1006632 Score = 84.2 bits (92), Expect = 1e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||| || || ||| |||| || | ||||||||| ||||| ||||| ||||||| Sbjct 519799 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 519740 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 ||||| ||| | | ||||||||| ||||| ||| | | | | || | || | Sbjct 519739 GGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCG 519680 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || || || || | |||||||| ||||||||||| || || || Sbjct 519679 AAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071937000960