Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 178 3e-39 seq2 98.7 2e-15 >seq3 Length=2410059 Score = 178 bits (196), Expect = 3e-39 Identities = 613/941 (65%), Gaps = 34/941 (4%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||| | |||||| ||||| ||| || || ||| | ||||| |||||| Sbjct 1853764 TACAACTACTTCGGTTTCAAGACGCTTGAGCGCTCATACCTCTTGCGCATTGACGGCAAG 1853823 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | || || ||||||||| | ||||| || || | || || ||| || || Sbjct 1853824 GTTGCCGAGCGTCCCCAGCACATGATCATGCGTGTTTCTATTGGTATCCACGGCGACAAC 1853883 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || || | || | ||||| |||| | ||| || |||| | || || ||| | Sbjct 1853884 ATTGAAAAGGTCATTGAGACCTACAACCTCATGTCCGAGCGCTACTTCACCCACGCCTCG 1853943 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || || ||||||||||| |||||| || ||| || || ||||| || | || Sbjct 1853944 CCTACTCTCTTCAACGCTGGTACCCAGCACCCCCAGATGTCGTCATGCTTCCTCGTCGCG 1854003 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTC 249116 ||| | || |||||| ||||||| || || ||||| || || || | || |||| || Sbjct 1854004 ATGAAGGATGACTCTATCGACGGTATCTACGACACTCTCAAGACCTGC-GCTCAGATCTC 1854062 Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 || || ||||| ||||||||| | || ||||||||| || ||||| |||||||| Sbjct 1854063 CAAGACTGCCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGGCTCGTACAT 1854122 Query 249177 CAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC 249236 || || || || | | ||||| || ||| | || || || || | || Sbjct 1854123 TGCTGGCACCAACGGTTACTCCAACGGTATTGTTCCCATGCTCCGTGCCTACGACGCGAC 1854182 Query 249237 CGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTT 249290 ||| | | | || |||||| ||| ||||| || | || ||||| || | Sbjct 1854183 TGCCCGCTACGTCGACCAGGGCGGTAATAAGCGCC---CCGGTGCCTTTGCCATCTACCT 1854239 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || ||||| || || | || || ||||| ||| | |||||| |||| || || Sbjct 1854240 TGAGCCTTGGCATGCGGACGTCTTCGACTTCCTCGACCTCCGTAAGAACCACGGAAAGGA 1854299 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | || |||||||| ||||||| ||| ||||| ||||| | |||||| || Sbjct 1854300 GGAGGTTCGTGCCCGTGACCTGTTCTACGCCCTCTGGGTTCCCGACCTCTTCATGAAGCG 1854359 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCT--CAT 249467 ||| |||| |||||||| ||||| || | | || |||| ||||||| | | | Sbjct 1854360 CGTTGAGGCGGACGGCGAGTGGACTCTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGA 1854419 Query 249468 CGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAA--TACGAATCCAACGGCA- 249523 || || || ||| | || || | | || || || |||| ||||| | | |||| Sbjct 1854420 CG-TCCACTCGGAG--GAGTTTG---AGGCTCTCTACGAAAAGTACGAGCGCGAGGGCAA 1854473 Query 249524 --TCGGCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGAT 249578 | ||||||| |||||||||| || || ||||| | | | ||| | |||| Sbjct 1854474 GGGCCGCAAGACCATCAAGGCTCAGAAGCTCTGGTTTGCTA---TCCTTGAGGCTCAGAC 1854530 Query 249579 AGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAAC 249637 ||||| || || || | | || | | ||| ||||| |||| |||| ||||| | Sbjct 1854531 CGAGACTGGTGGTCCCT-TCATGCTTTACAAGGACGCTGCCAACCGCAAGTCCAACCAGC 1854589 Query 249638 GGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCA 249697 ||| || || || ||| || || || ||||| | ||| | || | ||||| || Sbjct 1854590 AGCACCTCGGCACTATCAAGTCTTCCAACCTCTGCACCGAGATTATCGAGTACTCTGCCC 1854649 Query 249698 AGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTC 249738 || ||| | |||||||||||||| || |||| |||| Sbjct 1854650 CCGACGAGGTCGCCGTCTGCAACCTTGCTTCCATCGCTCTC 1854690 >seq2 Length=4291162 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260 ||| ||||| | ||||||| | ||||| ||||||||||||| ||||||| |||||||| Sbjct 920215 CTGCCCGCCGTACAAGCTCATCATCCTCGACGAGGCGGACAGCATGACGCAGGACGCGCA 920274 Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320 |||||| | || | ||||||||| | || | | || || ||||| || ||||| Sbjct 920275 AAGTGCCCTCAGGCGTATCATGGAGACGTATTCGCGTATTACCCGGTTTTGTCTCGTGTG 920334 Query 254321 CAACTACGT 254329 ||||||||| Sbjct 920335 CAACTACGT 920343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766179877888