Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 >seq12 Length=785499 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| ||| |||| || || || ||||| ||||| Sbjct 768286 CTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCAGCGAA 768227 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| ||||| | |||||||||||| ||| || |||||| Sbjct 768226 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTAACGTT 768167 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| ||| ||||| | ||||||||||||||||| || ||||| || Sbjct 768166 GTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTAAC 768107 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 768106 GAAGATCTGCAT 768095 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||||||||||||||||||| ||| ||| |||| || || || Sbjct 768070 GTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTG 768011 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| ||||| | |||||||||||| || || Sbjct 768010 CTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 767951 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||| ||||| | || ||||||||||| || Sbjct 767950 CGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTCTTGCCGGT 767891 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || ||||| ||||| Sbjct 767890 GAGAGTCTTGACGAAGATCTGCAT 767867 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| ||| || | || || || || Sbjct 767842 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTG 767783 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| |||| ||||| ||||||||||| | |||||||||||| ||| || Sbjct 767782 CTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTT 767723 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| ||| || |||| ||||| ||||| || || Sbjct 767722 GGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTCTTTCCGGT 767663 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || || || ||||| Sbjct 767662 GAGAGTCTTGACGAAAATCTGCAT 767639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075122960336