Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 327 1e-84 seq12 140 3e-28 seq1 107 2e-18 >seq3 Length=2410059 Score = 327 bits (362), Expect = 1e-84 Identities = 646/947 (68%), Gaps = 14/947 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || ||||| ||||| ||||| |||||||| || | |||||| | ||| ||| Sbjct 1854686 GCGATGGAAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATAATCTCG 1854627 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGATTGCA 23139 || || || ||| | |||| || ||||| | | ||| ||||||| || || ||| Sbjct 1854626 GTGCAGAGGTTGGAAGACTTGATAGTGCCGAGGT-GCTGCTGGTTGGACTTGCGGTTGGC 1854568 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | |||||||| |||||| | || || |||||| ||| | ||| | ||| || Sbjct 1854567 AGCGTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGAGCCTCAAGGATAGCAAA 1854508 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGT 23258 ||| | ||||||| | | ||| || ||| ||| || ||||||||||| || Sbjct 1854507 CCAGAGCTTCTGAGCCTTGATG-GTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTTTCGT 1854449 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACA 23316 | | || ||||| || | || |||||| || ||||| | | ||| || || Sbjct 1854448 AGAGAGCCTCAAACTCCTCCGAGTGGACGTCGGCAAGACCGGGGCACTCGGCA--GGGCA 1854391 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 ||||||| ||||| ||| |||||||| |||| || || || || | ||| || Sbjct 1854390 CATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTCATGAAGAGGTCGGGAACCCAGAG 1854331 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 ||||||||||| || ||||| || |||||||| || ||| |||||| | || | Sbjct 1854330 GGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTACGGAGGTCGAG 1854271 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 ||||| || |||||||||||||| ||||| ||||| | |||||| || || || | ||| Sbjct 1854270 GAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTT 1854211 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 ||| |||||||| |||||||| ||||| || || ||| | | ||||| || || | Sbjct 1854210 ATTACCGCCCTGGTCGACGTAGCGGGCAGTCGCGTCGTAGGCACGGAGCATGGGAACAAT 1854151 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 ||||||||| ||| ||| || | ||| || || || || | |||||| | Sbjct 1854150 ACCGTTGGAGTAACCGTTGGTGCCAGCAATGTACGAGCCCTTGGCACGGATGTTGTGGAT 1854091 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||||| ||| || || ||| | | || || ||| ||||| || ||||||||||| Sbjct 1854090 GTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGAGTGTCGTA 1854031 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 ||| || ||||| ||| || || ||||||| | ||| || || ||||| || | | Sbjct 1854030 GATACCGTCGATAGAGTCATCCTTCATCGCGACGAGGAAGCATGACGACATCTGGGGGTG 1853971 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 | ||| | || ||| || || || |||||| || ||||| | | ||||| || Sbjct 1853970 CTGGGTACCAGCGTTGAAGAGAGTAGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAG 1853911 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 ||||| || || ||| | ||||||| || ||||| ||||| || | || ||||| Sbjct 1853910 GTTGTAGGTCTCAATGACCTTTTCAATGTTGTCGCCGTGGATACCAATAGAAACACGCAT 1853851 Query 23857 CATCATGTATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACG 23913 ||||||| || || | |||| ||| | ||||| ||| || || ||||| || Sbjct 1853850 GATCATGTGCTGGGGACGCTCGGCAACCTT---GCCGTCAATGCGCAAGAGGTATGAGCG 1853794 Query 23914 TTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | | ||| || || || || |||| || ||||||||| |||| Sbjct 1853793 CTCAAGCGTCTTGAAACCGAAGTAGTTGTAAGCAAAGTCACGGTCGT 1853747 >seq12 Length=785499 Score = 140 bits (154), Expect = 3e-28 Identities = 294/434 (68%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 || || ||| | || || || || |||||||| || ||||| ||||| || || ||| Sbjct 745768 TTTGCGGAGCGTCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCGTTT 745709 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || || ||| | ||||| || ||||| ||||| ||||| || || ||||||| Sbjct 745708 GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTCACCTTCTCCAACGAG 745649 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC--- 58139 | || || || |||||||||||||| || || ||||| || || | | | | ||| Sbjct 745648 CTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCTTGTCTCCTCTTCACCCACCTG 745589 Query 58140 -ATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGAT 58198 | ||| || || | || | ||| | | || ||| |||||| ||| ||| Sbjct 745588 AAGCGTC---GCCCCCAC-CCCGACCTCATTGAGAAGATCATCCGCGAGGCCGTCAAGAT 745533 Query 58199 CGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTT 58258 || | ||||| ||||||| || || || ||| | | |||| |||||| | | Sbjct 745532 TGAGCAGGAGTTCCTCACCGAGGCTCTCCCCGTGTCTCTCATCGGCATGAACGCCAACCT 745473 Query 58259 GATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAG 58316 |||| |||||||||||||||| |||||| | || | ||| || | |||| Sbjct 745472 CATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAA 745413 Query 58317 CGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAG 58376 | |||||| ||| || || || || |||||| | |||||||||| |||||||| Sbjct 745412 GAT--TTACAAGTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAG 745355 Query 58377 ACAAACTTTTTCGA 58390 | ||||| ||||| Sbjct 745354 GCCAACTTCTTCGA 745341 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || || || | || ||||| | ||| Sbjct 767639 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACCATTACTCTGGAAGTTGAGTCCTCC 767698 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 767699 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 767758 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || || ||| || ||| || ||| Sbjct 767759 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAAC 767818 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || |||||||| || || ||| | || | || |||| Sbjct 767819 ATCCAGAAGGAGTCCACTCTTCACCTCGTCCTTCGTCTCCGCGGTGGTA 767867 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| ||||| || |||| || || ||||| Sbjct 768095 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 768154 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | || || |||||| Sbjct 768155 GACACCATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 768214 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || ||| | || || || || ||| Sbjct 768215 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAAC 768274 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || || || || Sbjct 768275 ATCCAGAAGGAGTCGACCCTCCACCTCGTCCT 768306 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| |||||||| | || || || |||| Sbjct 767867 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAGGTCGAGTCGTCG 767926 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 767927 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 767986 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| | || ||| || || || || ||| Sbjct 767987 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAAC 768046 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || || || || || | ||| | || |||| Sbjct 768047 ATTCAGAAGGAGTCGACCCTGCACCTTGTTCTCCGTCTGCGCGGTGGTA 768095 >seq1 Length=5410471 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 |||||||| || |||||| || || ||||| ||||| ||||| || || || ||| Sbjct 364529 ATCGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTGG 364588 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | || || ||||| || |||| ||||||||| || ||||||| | || || |||||| Sbjct 364589 CTCAAAAAGCGCGGGCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGAC 364648 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||||| ||||| || || ||||| || || |||| || ||| Sbjct 364649 GAGGGCCTCCACACCGACTTTGCATGTCTGCTGTATTCGCAC 364690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 ||| |||||||| | || ||||| || || ||||| || |||||| |||| || || Sbjct 4378483 ATCTAACATGCACAG----GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGA 4378538 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 ||||||||| |||| | ||||| | || ||||||||| ||| | || || Sbjct 4378539 GTCGTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCC 4378598 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 ||||||||||| || || ||||| ||||| ||| | || ||| || | || Sbjct 4378599 TGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGA 4378658 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| || || || || || | ||| | || |||| Sbjct 4378659 CTACAACATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGCCTGCGTGGTGGTA 4378714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766310846720