Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq12 105 5e-18 seq1 98.7 7e-16 >seq12 Length=785499 Score = 105 bits (116), Expect = 5e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 |||||| | |||||||| || ||||| || || | || ||||| || ||||| |||| Sbjct 745759 CGTCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCGTTTGCCTCCATC 745700 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| ||||| ||| |||||||| || | | || ||||||||| | || Sbjct 745699 TTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCT 745640 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||||| ||||| ||| |||||||||||| | || || Sbjct 745639 CGTGACGAGGGTCTCCACACCGACTTTGCTTGTCTCCTCTT 745599 >seq1 Length=5410471 Score = 98.7 bits (108), Expect = 7e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 33575 AGATGGGCGACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 |||| |||||||||||||| ||| |||||| ||||||||| || ||| || | ||| Sbjct 5376641 AGATTGGCGACAAGTTTGCGTCGCGTCACGG-CCAGAAGGGTACTATCGGTATTACCTAC 5376699 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 ||| ||||||||||||||| ||||| || | ||||| ||| | |||||||| || Sbjct 5376700 CGCCAAGAGGACATGCCGTTCACTGCCGAGGGTATCGTCCCCGACATTGTCATCAATCCA 5376759 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || | || ||||| ||||| Sbjct 5376760 CACGCTATTCCTTCGCGTATGAC 5376782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233530534448