Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12 132 6e-26 >seq12 Length=785499 Score = 132 bits (146), Expect = 6e-26 Identities = 180/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||| ||| |||||||| || | | || | |||||||| || ||||| Sbjct 745607 ACAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 745666 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||||||||| || ||||| || || || ||||| |||||||| ||||| Sbjct 745667 GCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAA 745726 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTCATG 42240 ||| || || || || ||||||||||| || | ||| || | || || | ||| Sbjct 745727 GATACCCTCAACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGACGAGCTGTCGTCCGA 745786 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| ||||||| ||||||||||| || | || || || || || || || || Sbjct 745787 GATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTT 745846 Query 42301 AAAGAGATA 42309 ||||| || Sbjct 745847 GAAGAGGTA 745855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139065772160