Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12 154 2e-32 seq3 150 3e-31 seq1 114 2e-20 >seq12 Length=785499 Score = 154 bits (170), Expect = 2e-32 Identities = 400/601 (67%), Gaps = 23/601 (4%) Strand=Plus/Minus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-CGCA 125317 |||||| | |||||||| | |||||| || || |||| ||||| || || ||| Sbjct 745924 GAGAACATTCACTCGGAGACCTACTCTCTCCTTATCGACACCTACATCCGTGACAACGCT 745865 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 ||| || ||||| || || ||||| || | || | || || ||||| | Sbjct 745864 -CGTCGTCAGTACCTCTTCAAAGCTATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGA 745806 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| |||| |||||| ||||||| || || | || || | || | || || Sbjct 745805 CTGGGCTCTTCGTTGGATCTCGGACGACAGCTCGTCCTTTGCGGAGCGTCTCATTGCCTT 745746 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 |||||||| ||||| |||||||| || || ||||| ||||||| ||||||||||| Sbjct 745745 TGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCGTTTGCCTCCATCTTCTGGCTCAAGAA 745686 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 ||| || |||||||| || || || | |||||| | || ||||| |||||||| || Sbjct 745685 GCGTGGCCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 745626 Query 125558 ACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATCTGCGTCCCGAGTGCAGATC 125614 ||| |||||||| ||| || || | || || | | || ||| | | || Sbjct 745625 CCACACCGACTTTGCTTGTCTCCTCTTCACCCACCTGAAGCGTCGCCCCCA-CCCCGA-- 745569 Query 125615 CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCT 125674 | | ||| ||| ||||| ||| ||||| | ||| || || ||||| || Sbjct 745568 CCTCATTGAGAAGATCATC---------CGCGAGGCCGTCAAGATTGAGCAGGAGTTCCT 745518 Query 125675 AACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACAT 125734 ||||| | || || || | || ||||||||| ||| || |||||| ||||||| Sbjct 745517 CACCGAGGCTCTCCCCGTGTCTCTCATCGGCATGAACGCCAACCTCATGTGCCAGTACAT 745458 Query 125735 AGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGC 125791 |||||||| || || ||||| || || | ||| || ||||||||||| | Sbjct 745457 TGAGTTTGTCGCCGACCGTCTGCT---CGTCGCCCTCGGCAACGAGAAGATTTACAAGTC 745401 Query 125792 CAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGA 125851 | || ||||| || || ||| | || || || |||| ||| ||||||| ||||| Sbjct 745400 GACCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGA 745341 Query 125852 G 125852 | Sbjct 745340 G 745340 >seq3 Length=2410059 Score = 150 bits (166), Expect = 3e-31 Identities = 313/461 (68%), Gaps = 4/461 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 |||||||| ||||| || || || || | ||| ||||| | || |||||||| |||||| Sbjct 1854199 CAGGGCGGTAATAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCATGCGGAC 1854258 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| |||| | || || ||| || || |||| || ||| | ||| Sbjct 1854259 GTCTTCGACTTCCTCGACCTCCGTAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGAC 1854318 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || |||||||| || || | |||||||||||||| | | | ||| | Sbjct 1854319 CTGTTCTACGCCCTCTGGGTTCCCGACCTCTTCATGAAGCGCGTTGAGGCGGACGGCGAG 1854378 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| | | || |||||||| |||| | || |||||| Sbjct 1854379 TGGACTCTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGACGTCCACTCGGAGGAGTTT 1854438 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 ||||| ||| ||||||| |||||| | || |||| | || | || | Sbjct 1854439 GAGGCTCTCTACGAAAAGTACGAGCGCGAGGGCAAGGGCCGCAAGACCA-TCAAGGCTC- 1854496 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| || ||| | ||||||| |||||||| ||| | ||| || | Sbjct 1854497 AGAAGCTCTGGTTTGCTATCCTTGAGGCTCAGACCGAGACTGGTGGTCCCTTCATGCTTT 1854556 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | | || ||||| |||||| | ||| | ||||| |||||| |||| Sbjct 1854557 ACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACTATCAAGTCTTCCA 1854616 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || ||||| || ||| | |||||| | | || |||||| Sbjct 1854617 ACCTCTGCACCGAGATTATCGAGTACTCTGCCCCCGACGAG 1854657 >seq1 Length=5410471 Score = 114 bits (126), Expect = 2e-20 Identities = 116/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 125444 CGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 ||| |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||| Sbjct 364543 CGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTGGCTCAAAAAGCGCGG 364602 Query 125504 ACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 || |||| ||| ||||| | |||||| | || || || ||||||||||| ||| Sbjct 364603 GCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACAC 364662 Query 125564 TGACTTTGCCATTCTACTGT-TTCGCAACT 125592 |||||||| ||| |||| |||||| || Sbjct 364663 CGACTTTGCATGTCTGCTGTATTCGCACCT 364692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059051788160