Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 122 2e-22 >seq12 Length=785499 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | |||||| || || || |||||| Sbjct 768291 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCA 768232 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || |||||||| || || || || ||||||||||| || || Sbjct 768231 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTA 768172 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || ||||| || ||||| ||||| || || || || Sbjct 768171 ACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTC 768112 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 768111 TTAACGAAGATCTGCAT 768095 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || ||||| | || || Sbjct 767851 AAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATC 767792 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || ||||| || || || || | ||| || || ||||| || || || || || Sbjct 767791 CTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 767732 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | || ||| | || || || || ||||| || Sbjct 767731 CTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGT 767672 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 767671 CTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398163963328