Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12 145 1e-29 >seq12 Length=785499 Score = 145 bits (160), Expect = 1e-29 Identities = 182/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| ||||||||||| | | || || |||||||| || ||||| Sbjct 745607 ACAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 745666 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||||||||| || ||||| || ||||| || || |||||||| ||||| Sbjct 745667 GCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAA 745726 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---G 33479 ||| || || || || ||||||||||| || | ||| || | | |||||| | Sbjct 745727 GATACCCTCAACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGACGAGCTGTCGTCCGA 745786 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||||| ||||||||||| || | || || || || || || || || Sbjct 745787 GATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTT 745846 Query 33540 AAAGAGATA 33548 ||||| || Sbjct 745847 GAAGAGGTA 745855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947075410560