Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 526 6e-144 >seq3 Length=2410059 Score = 526 bits (582), Expect = 6e-144 Identities = 1208/1795 (67%), Gaps = 47/1795 (3%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | |||||| | ||| || ||||| | || || | || | ||| || Sbjct 1853773 TTCGGTTTCAAGACGCTTGAGCGCTCATACCTCTTGCGCATTGACGGCAAGGTTGCCGAG 1853832 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||| ||| | ||||||||| ||||||||||||| || | |||| Sbjct 1853833 CGTCCCCAGCACATGATCATGCGTGTTTCTATTGGTATCCACGGCGACAACATTGAAAAG 1853892 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAACAA 363568 | ||||| || || || || | || | | | || ||||| |||||| |||| || Sbjct 1853893 GTCATTGAGACCTACAACCTCAT--GTCCGAGCGCTACTTCACCCACGCCTCGCCTACTC 1853950 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| ||||| || | | || |||||||| || ||||| || | ||||||| Sbjct 1853951 TCTTCAACGCTGGTACCCAGCACCCCCAGATGTCGTCATGCTTCCTCGTCGCGATGAAGG 1854010 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || || ||||| ||||||| ||||| || |||| || |||| || ||||||| || Sbjct 1854011 ATGACTCTATCGACGGTATCTACGACACTCTCAAGACCTGCGCTCAGATCTCCAAGACTG 1854070 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCA 363748 | ||||| || ||| | |||||||| | ||||| || | |||||| |||| Sbjct 1854071 CCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGGCTCGTACATTGCTGGCA 1854130 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808 | || ||||| || || | ||||||||||| |||| | ||| ||||| | | Sbjct 1854131 CCAACGGTTACTCCAACGGTATTGTTCCCATGCTCCGTGCCTACGACGCGACTGCCCGCT 1854190 Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868 ||||||||||||| || |||||| || || ||||| || || || |||||| | Sbjct 1854191 ACGTCGACCAGGGCGGTAATAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGC 1854250 Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTG 363928 |||| || | || || || || || ||||| || ||| ||||| ||||| | |||| Sbjct 1854251 ATGCGGACGTCTTCGACTTCCTCGACCTCCGTAAGAACCACGGAAAGGAGGAGGTTCGTG 1854310 Query 363929 CACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAG 363988 | ||||| |||||||| || || |||||| | |||| || ||||||||||| ||||| | Sbjct 1854311 CCCGTGACCTGTTCTACGCCCTCTGGGTTCCCGACCTCTTCATGAAGCGCGTTGAGGCGG 1854370 Query 363989 GTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTG 364048 | ||| | ||| | ||||| ||| || || |||||| |||| || | Sbjct 1854371 ACGGCGAGTGGACTCTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGACGTCCACTCGG 1854430 Query 364049 ACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTC 364108 | || | || ||||| ||||||||||| || ||||| |||| || ||||| || Sbjct 1854431 AGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGCGAGGGCAAGGGCCGCAAGACCATCA 1854490 Query 364109 CCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATA 364168 || |||||||| |||||||| ||| | || | |||| ||||| || |||| | Sbjct 1854491 AGGCTCAGAAGCTCTGGTTTGCTATCCTTGAGGCTCAGACCGAGACTGGTGGTCCCTTCA 1854550 Query 364169 TGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGC 364228 || | ||||| || | ||||||||||||||||||||||||||| || || || || Sbjct 1854551 TGCTTTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACTATCAAGT 1854610 Query 364229 AGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTA 364288 |||||| || ||||||||||| || ||| | || ||||||||| ||||| || | Sbjct 1854611 CTTCCAACCTCTGCACCGAGATTATCGAGTACTCTGCCCCCGACGAGGTCGCCGTCTGCA 1854670 Query 364289 ACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA---AGATGGT------ACTTTTGACC 364339 ||||||| || ||||| || || || ||||| || || ||| | | || Sbjct 1854671 ACCTTGCTTCCATCGCTCTCCCTGCCTTTGTCAACTTTGAGGGTGGCGGCAGCTACGATT 1854730 Query 364340 ACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACA 364399 | || | || | || | ||| | || || || || ||| || ||| || Sbjct 1854731 TCAAGAAGCTGCACGAGATCACCAAGGTTGTCACCAAGAACCTTGACTGTGTCATC-ACG 1854789 Query 364400 AG-AATTATTATCCAATTCCTGAAGC-CG-AGCGTTCTAATATGCGTCATCGCCCGATTG 364456 | || || || || | ||||| || || | | || || |||||||| ||||| | | Sbjct 1854790 CGCAACTACTACCCTGTCCCTGAGGCTCGCAAC--TCCAACATGCGTCACCGCCCAGTCG 1854847 Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGC 364516 |||||||||| ||||| || || || | |||||| ||| ||| | || || |||| Sbjct 1854848 GTCTTGGTGTCCAGGGTCTGGCCGATGCGTTTATGGCTCTCCGCATGCCCTTCGACTCGC 1854907 Query 364517 CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GACT 364575 |||| |||||| || || ||||||| || || || || || || | || | Sbjct 1854908 CTGAGGCTCGTCGGCTCAACCTCCAGATCTTCGAGACCATCTACCACGCTGCCCTCGAGT 1854967 Query 364576 GCTTCGTGTGATTTGGCAAAAACCAAG---GGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 | |||||||| |||| | || |||| ||| || | || ||||| ||||| Sbjct 1854968 -CCTCGTGTGAGATGGC---TGCTGAGGTCGGAACCTACCCTTCGTACGAGGGCTCCCCC 1855023 Query 364633 CTTTCGCAGGGAAAATTCCAGTTTGATCTATGG---AATGTCACGCCATCTGTCCGATGG 364689 | |||||||| || ||||||| || || ||| |||| || | | || ||| Sbjct 1855024 ATCTCGCAGGGCAAGCTCCAGTTCGACCTCTGGGGCCGTGTC---CCTACCGACCTCTGG 1855080 Query 364690 AACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACA 364749 |||||||| ||| ||| || || ||| | ||| |||||||| ||| || Sbjct 1855081 AACTGGGACGAGCTCCGTGAGAAGATTGCCAAGTACGGTGTCCGCAACTCGCTCCTTGTC 1855140 Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || ||||||||||| || || ||| | ||||| || || |||||||||||||| || Sbjct 1855141 GCTCCCATGCCCACTGCCTCGACTTCGCAGATTCTTGGCTGGAACGAGTGCTTCGAGCC- 1855199 Query 364810 TTTACA-AGCAAT-CTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 ||||| | || || || || || || ||||||||||| || || | ||| || Sbjct 1855200 -TTACACCTCGATGCTCTACTCTCGTCGTGTTCTTTCCGGTGACTTCCAGGTCGTCTGCC 1855258 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATA 364927 | || | || || | ||| | || |||| || | ||||||| | Sbjct 1855259 CCTGGCTCCTTCGTGACCTCATCAACCTTGACCTCTGGGACGAGAACATGAAGCAGCTCG 1855318 Query 364928 TCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTA 364987 |||| || || |||||| | ||| ||||||| ||| | || || || | ||| ||| Sbjct 1855319 TCATTGCTTCTGGTGGTTCGATCCAGCACATTCCTGGAATCCCCGACGAGATCAAGTCTA 1855378 Query 364988 TTTACAAAACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGATATGGCGGCCGATC 365044 ||||||| || || ||||| ||||| || ||| || ||||||| | || ||||| | Sbjct 1855379 TTTACAAGACTGTCTGGGAGATTTCGCA---GAAGTCTGTCATTGACCTTGCTGCCGACC 1855435 Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCTC 365102 | ||||| || ||| ||| |||||||| ||| ||||| || | | || | | Sbjct 1855436 GTGGTGCCTTCATCGACCAGTCTCAGTCGTTGAAC--ATTCACCTGTCCAACCCCTCGTT 1855493 Query 365103 CGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 | || ||||||| |||||||| |||||||| ||||| |||||| ||||| ||| Sbjct 1855494 CTCCCAGCTTACTTCCATGCACTTCTACGGCTGGAAGCGCGGTCTCAAGACCGGT 1855548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353332812512