Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq12 150 2e-31 >seq12 Length=785499 Score = 150 bits (166), Expect = 2e-31 Identities = 183/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || ||| ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 745607 ACAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 745666 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| ||||||||||| || ||||| || ||||| ||||| |||||||| ||||| Sbjct 745667 GCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAA 745726 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---G 32836 || || || || || ||||||||||| || | ||| || | | |||||| | Sbjct 745727 GATACCCTCAACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGACGAGCTGTCGTCCGA 745786 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| ||||||| ||||||||||| || | || || || ||||| ||||| || Sbjct 745787 GATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTT 745846 Query 32897 AAAGAGATA 32905 ||||| || Sbjct 745847 GAAGAGGTA 745855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631873273600