Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12 102 9e-17 >seq12 Length=785499 Score = 102 bits (112), Expect = 9e-17 Identities = 218/321 (68%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | ||| ||||| || || || | ||| ||| ||| || | Sbjct 745608 CAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGG 745667 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || ||||||||||| || || || ||||| ||||| || || Sbjct 745668 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAAG 745727 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCGGAATTACTGC 93269 ||||| || ||||| ||||| || | | ||| || ||||| | || | | | Sbjct 745728 ATACCCTCAACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGACGAGCTGTCGTCC--G 745785 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 |||||| | |||||| ||||| || ||||| || || || | || |||||||| | Sbjct 745786 AGATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATAGCTT 745845 Query 93330 TAAATAGGTAATCTCGCTCGTCCG-AATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 | || ||||| | || || || || || ||||| || ||||| | ||||| || Sbjct 745846 TGAAGAGGTACTGACG-ACGAGCGTTGTCACGGATGTAGGTGTCGATAAGGAGAGAGTAG 745904 Query 93389 ATTTCAGAATGGACATTCTCC 93409 | || || || | |||||| Sbjct 745905 GTCTCCGAGTGAATGTTCTCC 745925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860688627840