Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12 116 3e-21 seq7 89.7 4e-13 seq1 84.2 2e-11 >seq12 Length=785499 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | ||||| || || | ||||| ||||| || || || Sbjct 767639 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACCATTACTCTGGAAGTTGAGTCCTCC 767698 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| ||||| ||||| || Sbjct 767699 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 767758 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | |||||| ||| || | ||||| |||||| Sbjct 767759 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAAC 767818 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 767819 ATCCAGAAGGAGTCCAC 767835 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || ||| |||| ||||| || || | | Sbjct 767867 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAGGTCGAGTCGTCG 767926 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 767927 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 767986 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | ||||| |||||| | || || |||||| Sbjct 767987 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAAC 768046 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || | ||| | || ||||||| ||| Sbjct 768047 ATTCAGAAGGAGTCGACCCTGCACCTTGTTCTCCGTCTGCGCGGTGGT 768094 Score = 102 bits (112), Expect = 7e-17 Identities = 136/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 ||| ||| | | ||| |||| || || |||||||||| ||||| | | || ||| | Sbjct 767421 TTTTTTACAGCCTTA-CCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCTGACACCATC 767479 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || | || || || || ||||||||||| ||||| ||||| || || ||||| Sbjct 767480 GACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTC 767539 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| ||| | ||||| ||| ||| | || || |||||||| || || Sbjct 767540 ATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATCCAGAAG 767599 Query 22408 GAATCCAC 22415 || || || Sbjct 767600 GAGTCTAC 767607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || | || ||| | ||| | |||| Sbjct 767160 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAGGCC 767219 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || ||||| || || || ||||| Sbjct 767220 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATTTTCGCGGGCAAG 767279 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| ||| ||| | || || ||||||||||| || || || || Sbjct 767280 CAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATTCAGAAGGAGTCTAC 767332 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || || || ||| | ||||| || || || | || Sbjct 768095 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 768154 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| ||||||||||| ||||| || || || Sbjct 768155 GACACCATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 768214 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| || || | || || |||||| Sbjct 768215 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAAC 768274 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || | || | || |||| ||||| Sbjct 768275 ATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTGCGTGGAGG 768321 >seq7 Length=1006632 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| ||||| | | || ||| | ||| | |||| Sbjct 519646 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGACAACGTCAAGGCG 519705 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || ||||| || || ||||| || || |||||||| Sbjct 519706 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGCAAG 519765 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||| | ||||| ||||||| | || || |||| Sbjct 519766 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 519799 >seq1 Length=5410471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| | |||| ||| | ||| | |||| Sbjct 4378510 ACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACGTCAAGGCC 4378569 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || || || || || || |||||||| Sbjct 4378570 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAG 4378629 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| | || || |||||||| || || || || ||| Sbjct 4378630 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACC 4378683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727918153040