Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 seq12 123 5e-23 >seq1 Length=5410471 Score = 125 bits (138), Expect = 1e-23 Identities = 142/188 (76%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| |||| ||||| ||| |||| ||||||||||| |||| |||| || |||||||| Sbjct 3940514 GTCCTTGGTCCCAACGGTTCGGGCAAGTCTACCCTTGTCAAGCTCCTTACCGGCGAGACT 3940573 Query 280233 CAGGCCACTGAGGG--GT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || |||| |||||||| || ||| | || | |||||| || Sbjct 3940574 GAGCCCAACAAGGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATTGGTTACGTTGCC 3940633 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||||||||||||||||| | ||||| ||| ||||||| | | ||||| | Sbjct 3940634 CAGCACGCTTTCCACCACATCGACCAGCACCTTGACTCGACTCCTCTCGAGTACATGCTC 3940693 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 3940694 TGGCGTTA 3940701 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || |||||||||||||||||||| ||||| | || |||||||| | ||| Sbjct 3940037 GGTTCGCTCTCCGGTGGTTGGAAGATGAAGCTCGCCCTTGCGCGTGCCATTCTCTTCCGT 3940096 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || ||||| ||||| ||||||||| | ||| | |||||| ||||| Sbjct 3940097 GCCGACATTCTCCTCCTTGACGAGCCTACCAACCACCTCGACGTCGTCAACGTTACCTGG 3940156 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| ||| || | | ||||| |||| ||||| |||||||| Sbjct 3940157 CTTATTGACTACCTCACCTCGCTCACCACCTGCACTTCCATCATGGTCTCGCACGACTCC 3940216 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 3940217 GACTTCCT 3940224 Score = 105 bits (116), Expect = 1e-17 Identities = 178/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || |||||||||||||||||||| | || | || ||||| || | ||||| Sbjct 4623833 TCGCTCTCCGGTGGTTGGAAGATGAAGCTCGAGCTTGCCCGTGCCATGCTTATCGGTGCC 4623892 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || || || |||||||| || |||||| |||| | | ||| |||||||| Sbjct 4623893 GACATTCTCCTCCTCGATGAGCCGACTAACCACCTGGATGTCCAGACCGTCGCCTGGCTC 4623952 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | | |||||| |||| || | | | | ||| || ||||| ||||||||||| Sbjct 4623953 GAGGACTACCTCACCAACCTCCCCCAGATGACCTGCCTGATCGTCTCGCACGACTCTGGT 4624012 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || ||| || | | ||| || ||||| ||||| || |||||| || | Sbjct 4624013 TTCCTCGACAACGTCTGTACCGACATTATCCACTACGAGCAGAA---GAAGCTTGCCTAC 4624069 Query 279942 CACATCGGCAACCTGTC 279958 ||| || ||||| || Sbjct 4624070 TACAAGGGTAACCTCTC 4624086 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||||| | || ||||| ||||| || ||||| || || ||||| |||| ||||| ||| Sbjct 4624301 GGTGTTGTCGGTCCCAACGGTGCCGGAAAGTCGACTCTTATCAAGCTCCTCACTGGTGAG 4624360 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | ||||| |||| ||||| || | || | | ||||||||| Sbjct 4624361 ACCGTTCCTCAGGAGGGTACCGTCCACAAGCACCCTGCTCTCCGTGTCGGTTACGTCGCC 4624420 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| ||||||||||| | | || || |||| |||| || ||| ||||| ||| Sbjct 4624421 CAGCACGCCTTCCACCACATTAACCAGCATCTCGACAAGACTGCTGTCCAGTACATCCAG 4624480 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 4624481 TGGCGTTA 4624488 >seq12 Length=785499 Score = 123 bits (136), Expect = 5e-23 Identities = 304/456 (67%), Gaps = 20/456 (4%) Strand=Plus/Plus Query 251549 CAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGT 251608 |||| || ||| |||||||| || | |||||||| ||| ||||| | |||||| |||| Sbjct 745327 CAGACACGCGGGACTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGT 745386 Query 251609 CGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTG 251668 |||||||||| || | ||||| ||| | ||| || || |||| | ||||| | Sbjct 745387 CGAAGGGGTTGGTCGACTTGTAAATCTTCTCGTTGCCGAGGGCGACGAGCAGACGGTCGG 745446 Query 251669 CCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGA 251727 | |||||||| | ||||| | ||| || | | ||||||||| || | | |||| || Sbjct 745447 CGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGA-GACACGGGG 745505 Query 251728 ATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTC---------CTCCACAATT 251778 | ||||| || ||| |||| || | || ||||| || | ||| | Sbjct 745506 AGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCCTCGCGGATGATCTTCTCAA-T 745564 Query 251779 GCCTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAAC 251838 | || ||| | ||| |||| ||| | | | | ||||| |||| Sbjct 745565 GAGGTC-GGGGTGGGGGCGAC-GCTT------CAGGTGGGTGAAGAGGAGACAAGCAAAG 745616 Query 251839 TGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATC 251898 | ||| ||||||||||| ||| ||||| ||||||||| | ||||||||||| Sbjct 745617 TCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATG 745676 Query 251899 ACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCG 251958 | ||||| ||| ||||||||||||| | | ||| ||||||||||| | | |||||| Sbjct 745677 AGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAAGATACCCTCA 745736 Query 251959 ACACACACCCATGCAACAAGGCGCTCAGCAAACGAC 251994 || | | |||| || ||||| ||||| ||| Sbjct 745737 ACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGAC 745772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836589293456