Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq12 188 1e-42 seq1 165 2e-35 seq7 125 1e-23 >seq12 Length=785499 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || |||||||| || |||||||| || ||||| Sbjct 767865 CCACCGCGGAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 767806 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| ||| Sbjct 767805 AGAGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGA 767746 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||||||| ||||| ||||| | || || ||| Sbjct 767745 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACT 767686 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || ||||| ||||| ||||| ||||||||||| |||||||| Sbjct 767685 TCCAGAGTAATGGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Score = 158 bits (174), Expect = 2e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | ||||| || || || | || | ||| || || ||||| || |||||||| | Sbjct 768329 TTTACTGGCCTCCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGT 768270 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || || | || || || | |||||| || ||||| ||||| | || |||| Sbjct 768269 AGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGT 768210 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || |||||||| |||||||| |||||||| ||||| ||| ||||||||||| | | Sbjct 768209 CAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACG 768150 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || | || || || || |||||||||||||| ||||| |||||||| Sbjct 768149 ACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || || ||||| || || ||||| || || || Sbjct 768093 CCACCGCGCAGACGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAC 768034 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || ||| Sbjct 768033 AGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 767974 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 767973 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 767914 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || ||||| ||||||||||| |||||||| Sbjct 767913 TCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 767637 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 767578 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || |||||||| ||| Sbjct 767577 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGA 767518 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| || ||||||||||| | || || || Sbjct 767517 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTCCACC 767458 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | |||||||| || || || ||| Sbjct 767457 TCAAGAGTGATGGTCTTGCCGGTAAGG 767431 Score = 123 bits (136), Expect = 5e-23 Identities = 368/558 (66%), Gaps = 25/558 (4%) Strand=Plus/Plus Query 9937 TGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGA 9996 |||| |||| ||| |||| | || || ||| |||||||||||||| |||||||| | Sbjct 745306 TGACACCCGACTTGGCGTACGCAGACACGCGGGACTCGAAGAAGTTGGCCTTGCCCTGCA 745365 Query 9997 GGGAAATGAGCTCCATGAAGTCAAAGGGGTT-CTCGGCGCCAAACTGCTTGGGGTAACCG 10055 | || || | |||||| ||||| |||||||| ||| | || | ||| || ||| Sbjct 745366 GCGAGATCATCTCCATAAAGTCGAAGGGGTTGGTCGACTTGTAAAT-CTTCTCGTTGCCG 745424 Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115 || || || | ||||| || || ||||| |||||||||| ||| |||| | |||| Sbjct 745425 AGGGCGACGAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTC 745484 Query 10116 ATGCCAATCATGCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||||| || | | | || ||||| || ||| | ||| |||| || | ||| | Sbjct 745485 ATGCCGATGA-GAGACACGGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGG- 745542 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGA-GCTTC------G 10227 ||||| |||| |||| | | | || | | || ||| ||||| | Sbjct 745543 --CCTCGCGGATGATCTTCTCAATG----AGGTCGGGGTGGGGGCGACGCTTCAGGTGGG 745596 Query 10228 AATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 | ||||| |||| | |||||| |||||||| || ||||| |||||||| Sbjct 745597 TGAAGAGGAGACAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGG 745656 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347 | || || || |||||||| || || || |||||||| |||| | ||||| | Sbjct 745657 AGAAGGTGAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATC 745716 Query 10348 CGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAG---GAGC 10404 | ||||| | | |||||| ||| | |||| | ||| ||||| || ||| |||| Sbjct 745717 CAGAGAAGAAGATACCCTCAACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGACGAGC 745776 Query 10405 GGTCGCGCGAAAAGTATTTCGA--GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGT 10462 |||| ||| | | ||| ||||| | |||||||| | | ||||| || Sbjct 745777 TGTCGTCCGAGA--TCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGT 745834 Query 10463 CTCGATAGCCTCGAAGAG 10480 ||||||||| | |||||| Sbjct 745835 CTCGATAGCTTTGAAGAG 745852 >seq1 Length=5410471 Score = 165 bits (182), Expect = 2e-35 Identities = 678/1051 (65%), Gaps = 61/1051 (6%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| | || ||| ||| ||||| | || || ||||||||| Sbjct 3940701 TAACGCCAGAGCATGTACTCGAGAGGAGTCGAGTCAAGGTGCTGGTCGATGTGGTGGAAA 3940642 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC---AGAGCCCCGA 225094 || |||||||| ||||| | ||| | ||| || |||||||| || | |||| Sbjct 3940641 GCGTGCTGGGCAACGTAACCAATGACGAGGTTAGGGTGCTTCCAGACGGTACCGCCCTTG 3940582 Query 225095 GTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||||||||| |||| ||||| || |||| |||||||| ||| ||||| Sbjct 3940581 TTGGGCTCAGTCTCGCCGGTAAGGAGCTTGACAAGGGTAGACTTGCCCGAACCGTTGGGA 3940522 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGAT-CT- 225212 |||| ||| ||| ||||| || | | ||||| ||| | || | | ||| | || Sbjct 3940521 CCAAGGACGGCAACACGGGACGAGAGCGAGACCTGGAGGTTGATGTCG-TAAAGCTGCTG 3940463 Query 225213 --CAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCAC-GGTCCT 225269 | || || |||| || | ||| ||||| ||| | || | || |||| Sbjct 3940462 GACGGGAGCACCGGGGTACTGGAACGAGACGTTACGCATCTTGA-GAAGCGACTTCTCCT 3940404 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GTCACCGCGTC 225327 ||| | | ||| || || | || ||||| | || ||||| ||| | | Sbjct 3940403 TGGTCTTGACACCGTCAAGAAGAGGAGGGTCGGGAAGCTTGAACTTGTAGTCCTCTCCAA 3940344 Query 225328 CTTC-AGGTCGTAGTAAGATGCAGCCTCGGG-TCG-CTTTGCCACGAAAGCAGACAGGTT 225384 | || |||||| |||| || |||||||| || ||| ||||| || ||||| Sbjct 3940343 CGTCAAGGTCGAAGTACGAGCGGGCCTCGGGAACGTGGTTG--ACGAAGGCCTCGAGGTT 3940286 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGC 225444 ||| ||| | ||||||||| ||| || || | ||| || | ||| Sbjct 3940285 GCCGGGGTAGCGCTTGAGCTTGAAGTTGTTGATGTGGAGGACA----TCGGTGATGGTGC 3940230 Query 225445 -GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGA 225503 || ||||||| | |||||||| || || |||||||| | | | || || ||| Sbjct 3940229 GGTTAAGGAAGTCGGAGTCGTGCGAGACCATGATGGAAGTGCAGGTGGTGAGCGAGGTGA 3940170 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| || ||||| | |||||| |||||| | |||||| ||||| ||||| || | Sbjct 3940169 GGTAGTCAATAAGCCAGGTAACGTTGACGACGTCGAGGTGGTTGGTAGGCTCGTCAAGGA 3940110 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 | || ||||| ||| | ||| ||||| |||| || | |||||||| ||||| || | Sbjct 3940109 GGAGAATGTCGGCACGGAAGAGAATGGCACGCGCAAGGGCGAGCTTCATCTTCCAACCAC 3940050 Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGC---CGTACTCCAGGA 225680 |||| || || || || || ||||| | ||||| |||| || |||| ||| Sbjct 3940049 CGGAGAGCGAACCAATGGAGTGCTTCTGCTTGTCCTCGTCGAAGCCGACGGACTCGAGGG 3939990 Query 225681 GCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGT 225740 || || ||| ||| || | | ||||| | | | | ||| ||| Sbjct 3939989 TCGACTTGAT------CTCCTCAG------GGGTGGCAAGGAGACGCTTGTCCGAAAGG- 3939943 Query 225741 AATCATATACGGTC-ATGTCCGAGACAGAC---------GCGTCAATGTCGTGGTCCACG 225790 | | ||| ||| ||||| |||| |||| |||||||| | ||| Sbjct 3939942 ------ACCCAGTCGATGATCGAGATAGACTCCTCGGAGCCGTCGATGTCGTGCTGGACG 3939889 Query 225791 TACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCA 225850 || | || |||| || || | |||||||||||||| | |||| || |||| || Sbjct 3939888 TAGAAGGTACGGACCTCGGAGGGGTCGGGGAAGCCCTCAACCTGGTTGTTGACAATGGCG 3939829 Query 225851 CGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGC 225910 | |||||| ||| || | ||||| | || | ||| ||||| | | || ||| Sbjct 3939828 TTCATGAGGGTAGACTTTCCGGTACCGTTACGGCCAAGGAGACCGTAGCGGTGGCCACGC 3939769 Query 225911 TTGATGTTGAGG--CGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACT 225968 |||| |||| ||||| || || ||||||||| |||| ||||||||| ||||| Sbjct 3939768 TTGAGACGGAGGTTGGCGTG--GTGGAGAAGGATCTTGGCACCGTAGGCAAGGTTGAACT 3939711 Query 225969 -CGCAA--TCGCACAGGTCCTCACCCTCCTC 225996 | ||| | ||| ||||||||||||||||| Sbjct 3939710 GCTCAATGTTGCAGAGGTCCTCACCCTCCTC 3939680 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 4378712 CCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 4378653 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || ||||| || || Sbjct 4378652 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 4378593 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 4378592 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACC 4378533 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | |||||| || || ||||||||||||||||| Sbjct 4378532 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 4378498 Score = 104 bits (114), Expect = 4e-17 Identities = 114/150 (76%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 ||||||||| || | |||| | ||||||||||||||||||| ||||| |||||| Sbjct 364687 CGAATACAGCAGACATGCAAAGTCGGTGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTT 364628 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 ||| || ||| ||| |||| ||||| || || |||||||| |||||| ||||| Sbjct 364627 GGAGAAGGTCAGGCCGCGCATAAGCCCGCGCTTTTTGAGCCAGAAGATGGCGGCAAACGA 364568 Query 10346 CCCGGAGAACAGAAGA--CCCTCCACGCAC 10373 ||| |||| |||||| ||||| |||||| Sbjct 364567 CCCCGAGA--AGAAGATGCCCTCGACGCAC 364540 >seq7 Length=1006632 Score = 125 bits (138), Expect = 1e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || | || || || | |||||| |||||||| ||||| | || ||| Sbjct 519797 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 519738 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| || || || |||||||| || ||||| ||||||||| ||||||||||| | Sbjct 519737 TCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAA 519678 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || || || || | ||||||||| || || |||||||||||||| Sbjct 519677 GACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622215675520