Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 >seq12 Length=785499 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || |||||| || ||||| || || ||| Sbjct 768291 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCA 768232 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| ||||||||||| || ||||| |||||| || Sbjct 768231 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTA 768172 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| || ||||| || | || | ||| ||||| || || || Sbjct 768171 ACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTC 768112 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 768111 TTAACGAAGATCTGCAT 768095 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || |||||| ||| || || || || || Sbjct 767835 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTTCCG 767776 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||| ||||| ||||||||||| || ||||| |||||| || Sbjct 767775 GCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 767716 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||| || || |||| || | || || ||||| ||||| Sbjct 767715 ACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTCTTTCCGGTGAGAGTC 767656 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 767655 TTGACGAAAATCTGCAT 767639 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| | || | || || || || ||||||||||| || Sbjct 768096 ATACCACCGCGCAGACGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCC 768037 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || || || |||||||| |||| || ||||| ||||| ||| Sbjct 768036 GACAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGA 767977 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | |||||| | || ||| Sbjct 767976 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCG 767917 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| |||||||| ||||| || || || |||||||| Sbjct 767916 ACCTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134318073792