Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 396 5e-105 seq12 264 2e-65 seq1 152 1e-31 >seq3 Length=2410059 Score = 396 bits (438), Expect = 5e-105 Identities = 892/1326 (67%), Gaps = 31/1326 (2%) Strand=Plus/Minus Query 244296 GGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGT 244355 ||||||| | ||| ||||| ||| |||| || |||| ||||||||| | |||| Sbjct 1855060 GGCCCCAGAGGTCGAACTGGAGCTTGCCCTGCGAGATGGGGGAGCCCTCGTACGAAGGGT 1855001 Query 244356 AGGGACCGTCGCGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTC 244414 ||| ||| | | | | |||| || ||| |||||||| |||| |||||||||| Sbjct 1855000 AGGTTCCGAC-CTCAGCAGCCATCTCACACGAGGACTCGAGGGCAGCGTGGTAGATGGTC 1854942 Query 244415 TCGAAGATCATCTTGTTCATGTCG-CGGGCCTT-GCCGCAGGTGAAGGGGATGCCCATCA 244472 ||||||||| ||| | | || || |||| | || || |||||| |||| | Sbjct 1854941 TCGAAGATCTGGAGGTTGA-GCCGACGAGCCTCAGGCG-AGTCGAAGGGCATGCGGAGAG 1854884 Query 244473 TCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGG 244532 ||| || | |||||||| ||||| || || | |||| || | ||| ||| |||||| Sbjct 1854883 CCATAAACGCATCGGCCAGACCCTGGACACCAAGACCGACTGGGCGGTGACGCATGTTGG 1854824 Query 244533 AGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC-CGTCGATCACCTTGTTGAGGTTGCGG 244591 || || || || || ||||| |||||| ||| ||| || || ||||| | Sbjct 1854823 AGTTGCGAGCCTCAGGGACAGGGTAGTAGTTGCGCGT-GATGACACAGTCAAGGTTCTTG 1854765 Query 244592 GTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCG 244651 |||| | | || ||| |||| || || ||||| | | | |||| | Sbjct 1854764 GTGACAACCTTGGTGATCTCGTGCAGCTTCTTGAAATCGTAGCTGCCGCCACCCTCAAAG 1854705 Query 244652 ATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCC 244711 || ||||| | ||| |||| | || |||||||||||||| ||||| Sbjct 1854704 TTG---------ACAAAGGCAGGGAGAGCGATGGAAGCAAGGTTGCAGACGGCGACCTCG 1854654 Query 244712 TCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGG 244771 || | | | ||||| || |||||||||||||||||| ||||||| ||||| ||| Sbjct 1854653 TCGGGGGCAGAGTACTCGATAATCTCGGTGCAGAGGTTGGAAGACTTGATAGTGCCGAGG 1854594 Query 244772 TGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTC 244831 ||||| || ||||||||| |||| ||||||||||| ||||||||||| || || ||| Sbjct 1854593 TGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAGGGACCACCAGTC 1854534 Query 244832 TCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCC 244891 ||| ||| || | |||| |||||| | | |||||||| ||| |||| || Sbjct 1854533 TCGGTCTGAGCCTCAAGGATAGCAAACCAGAGCTTCTGAGCCTTGATGGTCTTGCGGCCC 1854474 Query 244892 TTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCA---GACCTCG 244948 |||||||| |||||| ||| || ||||| ||||| || | ||| ||| Sbjct 1854473 TTGCCCTCGCGCTCGTACTTTTCGTAGAGAGCCTCAAACTC---CTCCGAGTGGACGTCG 1854417 Query 244949 TCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTC 245008 | || ||||||||| || |||||||||||| ||||||||||| | ||| || | | Sbjct 1854416 GCAAGACCGGGGCACTCGGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGC 1854357 Query 245009 TGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCC 245068 | ||||||||||||||| | ||||||||| | ||| ||||| | || | ||| ||| Sbjct 1854356 TTCATGAAGAGGTCGGGAACCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCC 1854297 Query 245069 GAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATG 245128 || |||||| | || || | ||||| |||||||| | ||||| ||||| | | Sbjct 1854296 TTTCCGTGGTTCTTACGGAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGG 1854237 Query 245129 TAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCG 245188 |||| || | ||| ||||| ||||| || || |||||||| || | | |||| Sbjct 1854236 TAGATGGCAAAGGCACCGGGGCGCTTATTACCGCCCTGGTCGACGTAGCGGGCAGTCGCG 1854177 Query 245189 TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 | | || || || | || || || ||||| |||| ||||||||||| ||||| Sbjct 1854176 TCGTAGGCACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAGCAATGTAC 1854117 Query 245249 GCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATG 245308 | ||||||| | | || |||| |||| | || | |||||||| ||||||||| Sbjct 1854116 GAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATC 1854057 Query 245309 AGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGC 245368 | |||||| |||||| ||||| || || || || ||| |||||| || Sbjct 1854056 TGAGCGCAGGTCTTGAGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCATCGCGACG 1853997 Query 245369 AGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCG 245428 || ||||| || |||| |||||| | || | | | |||||| ||||| || |||| Sbjct 1853996 AGGAAGCATGACGACATCTGGGGGTGCTGGGTACCAGCGTTGAAGAGAGTAGGCGAGGCG 1853937 Query 245429 TGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTC 245487 ||||| ||||||| |||| || | || ||| |||| | | || |||||||| Sbjct 1853936 TGGGTGAAGTAGC-GCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTGTC 1853878 Query 245488 GCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTC 245547 ||||||||| | | | ||||| |||||||||| ||| || ||| Sbjct 1853877 GCCGTGGATACCAATAGAAACACGCATGATCATGTGCTGGGGACGCTC---GGCAACCTT 1853821 Query 245548 GGGTCCCTTGAGC---ATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCC 245604 | | || || | ||| |||||||| ||||||||||| || ||||| ||| | Sbjct 1853820 GCCGTCAATGCGCAAGAGGTATGAGCGCTCAAGCGTCTTGAAACCGAAGTAGTTGTAAGC 1853761 Query 245605 AAAGTC 245610 |||||| Sbjct 1853760 AAAGTC 1853755 >seq12 Length=785499 Score = 264 bits (292), Expect = 2e-65 Identities = 381/528 (72%), Gaps = 11/528 (2%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||| || |||||||||||||||||||| |||||||| || Sbjct 745852 CTCTTCAAAGCTATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTTCGT 745793 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| | | | | | || | ||| | || | |||||| ||||||| ||| Sbjct 745792 TGGATCTCGGACGACAGCTCGTCCTTTGCGGAGCGTCTCATTGCCTTTGCCGCCGTTGAG 745733 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGAT 42787 || ||||||||||| || | || ||||||||||||||||||||| || || || || Sbjct 745732 GGTATCTTCTTCTCTGGATCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTC-AT 745674 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || ||||||||||| ||||| |||||| | |||||||| || || | ||||| Sbjct 745673 GCCTGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTT 745614 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 ||| || ||||| ||| | |||||| | || ||| || | | | Sbjct 745613 TGCTTGTCTCCTCTTC---ACCCACCTGAAGCGTCGCCCCCACCCCGACCTCATTGAGAA 745557 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 |||||| |||||||| |||| ||| ||||||||||||| || | || |||||||| Sbjct 745556 GATCATCCGCGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTCCCCGTGTC 745497 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 || ||||||||||| | ||||||||||| ||||||| ||| |||||||||| ||| Sbjct 745496 TCTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCT 745437 Query 43028 CCT-GT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTAT 43084 || || ||| | || | || | | ||||| || | ||||||||||||||| Sbjct 745436 GCTCGTCGCC--CTCGGCAACGAGAAG-ATTTACAAGTCGACCAACCCCTTCGACTTTAT 745380 Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||| |||||| || |||||||| ||||||| |||||| ||||| Sbjct 745379 GGAGATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGAGTCCCGCGT 745332 >seq1 Length=5410471 Score = 152 bits (168), Expect = 1e-31 Identities = 197/265 (74%), Gaps = 9/265 (3%) Strand=Plus/Plus Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 |||||||||||||||||||||||| | || ||| |||||||||||||||| || | Sbjct 364543 CGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTGGCTCAAAAAGCGCGG 364602 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | |||| ||| || |||||||| ||||| |||||| | | |||||||| || || | Sbjct 364603 GCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACAC 364662 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC--AAGCCCTCGAAGGAGCGG 42899 |||||||| || || |||| ||| ||||| | |||| ||| || ||| ||| Sbjct 364663 CGACTTTGCATGTCTGCTGTATTCG---CACCTGAAGCACCGAAGTACT-GAA-GAGGAA 364717 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 || | || || | |||| || |||||||||||||||||||||||||| | | ||| Sbjct 364718 GTACACGCGATTGTGTCGGAAGCGGTGGAGATCGAGAAGGAGTTCCTCACCGACGCCCTG 364777 Query 42960 CC-CGTGTCCCTGGTCGGCATGAAC 42983 || ||| |||| ||||||| ||| Sbjct 364778 CCATGTG-CCCTCATCGGCATCAAC 364801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339011132160