Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq12 100 6e-16 seq1 87.8 4e-12 >seq12 Length=785499 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || ||||||||| | | |||||| | |||||||| || || || |||||||| | Sbjct 745495 CTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTG 745436 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| || || | ||||| | ||||| || | |||||||| | |||||||||| Sbjct 745435 CTCGTCGCCCTCGGCAACGAGAAGATTTACAAGTCGACCAACCCCTTCGACTTTATGGAG 745376 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 | || ||||| || || || | ||||||||||| Sbjct 745375 ATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGA 745341 >seq1 Length=5410471 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | |||||||| || || || ||||||||| | ||||||| || ||||| || Sbjct 364869 ATGTGCCAGTACATGGAGTTTGTCGCCGACCGCCTGACTGTCGCGCTCGGCTATGACAAG 364928 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | ||| || | | |||||||| | || ||||||||||| ||||| ||||| ||| | Sbjct 364929 ATCTACCACGCGACCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAAGGCAAAGCC 364988 Query 243706 AACTTCTTCGA 243716 ||||| ||||| Sbjct 364989 AACTTTTTCGA 364999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879773909600