Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 262 5e-65 seq12 141 1e-28 seq1 123 3e-23 >seq3 Length=2410059 Score = 262 bits (290), Expect = 5e-65 Identities = 698/1058 (66%), Gaps = 30/1058 (3%) Strand=Plus/Minus Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 ||||| |||| || ||||| |||||||| || || | |||||| || | ||| || || Sbjct 1854881 ATAAACGCATCGGCCAGACCCTGGACACCAAGACCGACTGGGCGGTGACGCATGTTGGAG 1854822 Query 114338 TTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 114394 || ||||| ||| || || || | || | ||| || | | || || ||| Sbjct 1854821 TTGCGAGC---CTCAGGGACAGGGTAGTAGTTGCGCGTGATGACACAGTCAAGGTTCTTG 1854765 Query 114395 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA--- 114451 ||||||||||| ||||| || || ||||| | | |||| | |||| | ||| Sbjct 1854764 GTGACAACCTTGGTGATCTCGTGCAGCTTCTTGAAATCGTAGCTGCCGCCACCCTCAAAG 1854705 Query 114452 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 |||||| | ||| || ||||| || || || || || || | | ||| || || Sbjct 1854704 TTGACAAAGGCAGGGAGAGCGATGGAAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCA 1854645 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 | |||||| ||||| || || || | || ||| ||| || ||||| | || || || Sbjct 1854644 GAGTACTCGATAATCTCGGTGCAGAGGTTGGAAGACTTGATAGTGCCGAGGTGCTGCTGG 1854585 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||||| ||| || ||||||||||||||| | || || ||||| || || Sbjct 1854584 TTGGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGA 1854525 Query 114632 GACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT- 114689 | || || ||||| ||||| | || | | || | ||| ||| || |||| Sbjct 1854524 GCCTCAAGGATAGCAAACCAGAGCTTCTGAGCCTTGA----TGGTCTTG---CGGCCCTT 1854472 Query 114690 --CCTC---CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 114744 |||| |||||||||| |||||| || |||||||| || | | || | || Sbjct 1854471 GCCCTCGCGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCGGCAAG 1854412 Query 114745 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCAT 114804 || || || | ||||| | ||||| ||| | || || ||||||| |||||||| Sbjct 1854411 ACCGGGGCACTCGGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTCAT 1854352 Query 114805 GAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 114864 ||||||||| || | |||||| || |||| || || || ||| | || || | || Sbjct 1854351 GAAGAGGTCGGGAACCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTTCC 1854292 Query 114865 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 114924 || || ||| | || | ||||| | || ||||| ||||| || || ||||| | Sbjct 1854291 GTGGTTCTTACGGAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAGAT 1854232 Query 114925 CGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAA 114981 || | | || || | ||| |||||| || || | || || || | | Sbjct 1854231 GGCAAAGGCACCGGGGCGCTTATTACCGCCCTGGTCGACGTAGCGGGCAGTCGCGTCGTA 1854172 Query 114982 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGAC 115039 | || ||||| |||| ||||| | || | || || || || || |||||| | Sbjct 1854171 GGCACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAGCAATGTACGAGCC 1854112 Query 115040 TTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 115099 ||||| | || | |||||||| | ||| ||||| || || ||| ||||| || Sbjct 1854111 --CTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGA 1854054 Query 115100 GCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGG 115159 ||||| | ||||| || ||||||| |||||||| |||||| |||| | |||| ||| Sbjct 1854053 GCGCAGGTCTTGAGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCATCGCGACGAGG 1853994 Query 115160 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 115219 ||||| |||||| || || | ||||||||||||||||| || || | |||||| Sbjct 1853993 AAGCATGACGACATCTGGGGGTGCTGGGTACCAGCGTTGAAGAGAGTAGGCGAGGCGTGG 1853934 Query 115220 ATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 115279 |||| | | |||||| | ||||||||| | ||| ||||| || ||| Sbjct 1853933 GTGAAGTAGCGCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTGTCGCCG 1853874 Query 115280 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 || ||||| || || || ||||| | ||||| ||||| Sbjct 1853873 TGGATACCAATAGAAACACGCATGATCATGTGCTGGGG 1853836 >seq12 Length=785499 Score = 141 bits (156), Expect = 1e-28 Identities = 348/517 (67%), Gaps = 8/517 (2%) Strand=Plus/Plus Query 125776 CTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTCTT 125835 |||||||||||| | ||| || | || ||| |||||||||| || || ||||| | Sbjct 745340 CTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 745399 Query 125836 TGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCAA 125894 || || |||| | | | || | | ||| ||||| || | ||| |||||| Sbjct 745400 CGACTTGTAAATCTTCTCGTTGCCGAGGGCGAC-GAGCAGACGGTCGGCGACAAACTCAA 745458 Query 125895 TGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG-AGCGCGTCCAAG 125953 |||||| |||| | | |||||| |||||||| ||| ||| || || || | Sbjct 745459 TGTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGAG-ACACGGGGAGAGCCTCGGTG 745517 Query 125954 ATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCCA 126013 | |||| ||| |||||| | ||||| || || | ||| | |||| ||| Sbjct 745518 AGGAACTCCTGCTCAATCTTGACGGCCTCGCGGATGATCTTCTCAATGAGGTCGGGGTGG 745577 Query 126014 GGTCTATTGCGCAAAGTCT-TGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTC 126072 || | | || | || ||||||| ||||| || ||||||||||||||| Sbjct 745578 GGGCGAC-GCTTCAGGTGGGTGAAGAGGAGACAAGCAAAGTCGGTGTGGAGACCCTCGTC 745636 Query 126073 ACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCA 126132 ||| |||||||| || || |||||| || || |||||||| || |||||||| | ||| Sbjct 745637 ACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGGCCACGCTTCTTGAGCCA 745696 Query 126133 GAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAG 126192 ||| || | ||| || || ||||||||||| ||||| || || || |||| ||| Sbjct 745697 GAAGATGGAGGCAAACGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAAGGCAATGAG 745756 Query 126193 ACGCTCAGCAAAGGAGCGCGACTTTGTGTCA-AACCACTTCATCGCCCACTGCGCCTTTT 126251 |||||| |||||||| || | | || | | ||| | ||||| | ||||| | Sbjct 745757 ACGCTCCGCAAAGGA-CGAGCTGTCGTCCGAGATCCAACGAAGAGCCCAGTCGGCCTTCT 745815 Query 126252 TCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||| ||| || |||| ||||| ||| |||| ||||| Sbjct 745816 TCTTGATGCAGGGGATGGTCTCGATAGCTTTGAAGAG 745852 >seq1 Length=5410471 Score = 123 bits (136), Expect = 3e-23 Identities = 194/273 (71%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 125917 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCAC 125976 ||| || ||||||||| |||||| || ||||| || |||| ||||||| || ||||| Sbjct 364801 GTTGATGCCGATGAGGGCACATGGCAGGGCGTCGGTGAGGAACTCCTTCTCGATCTCCAC 364742 Query 125977 GGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAA-AGTCTTGA 126035 |||||| ||| || ||||| | ||| | ||| || | || || || Sbjct 364741 CGCTTCCGACACAATCGCGTGTACT---TCCTCTTCAGTACTTCGGTGCTTCAGGTGCGA 364685 Query 126036 AGAGTTCC-ACG-GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGA 126093 | | | || ||||| || |||||| |||||||| ||||||||||| || || || Sbjct 364684 ATACAGCAGACATGCAAAGTCGGTGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGA 364625 Query 126094 GAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACC 126153 |||| ||| || |||| || || ||||| || | |||||| || || ||| || || Sbjct 364624 GAAGGTCAGGCCGCGCATAAGCCCGCGCTTTTTGAGCCAGAAGATGGCGGCAAACGACCC 364565 Query 126154 CGAGAAGAAGATTCCCTCCACACACGCGAACGC 126186 |||||||||||| ||||| || ||||| ||||| Sbjct 364564 CGAGAAGAAGATGCCCTCGACGCACGCAAACGC 364532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353480529280