Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 271 8e-68 >seq3 Length=2410059 Score = 271 bits (300), Expect = 8e-68 Identities = 623/930 (67%), Gaps = 16/930 (2%) Strand=Plus/Plus Query 93717 TTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAG 93776 |||| | ||||| | ||||| || || ||| || |||||| | || || |||| Sbjct 1853763 TTACAACTACTTCGGTTTCAAGACGCTTGAGCGCTCATACCTCTTGCGCATTGACGGCAA 1853822 Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836 |||| ||||||| || || || || | ||||| || | || || || |||||| || | Sbjct 1853823 GGTTGCCGAGCGTCCCCAGCACATGATCATGCGTGTTTCTATTGGTATCCACGGCGACAA 1853882 Query 93837 CATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTAT---ACCATGGC 93893 ||| || || | | | | || |||| || | | || ||| || Sbjct 1853883 CATTGAAAAGGTCATTGAGACCTACAACCTCATGTCCGA---GCGCTACTTCACCCACGC 1853939 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | || || || |||||||| || |||| | || |||||||| || || ||||| | Sbjct 1853940 CTCGCCTACTCTCTTCAACGCTGGTACCCAGCACCCCCAGATGTCGTCATGCTTCCTCGT 1853999 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| |||| ||||| ||| ||| || | ||||| |||||| ||| || || Sbjct 1854000 CGCGATGAAGGATGACTCTATCGACGGTATCTACGACACTCTCAAGACCTGCGCTCAGAT 1854059 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || ||||| || ||||| || | ||||||| ||| || || Sbjct 1854060 CTCCAAGACTGCCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGGCTCGTA 1854119 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || ||||| || ||||||||| | || || |||||||| | || || | Sbjct 1854120 CATTGCTGGCACCAACGGTTACTCCAACGGTATTGTTCCCATGCTCCGTGCCT---ACGA 1854176 Query 94134 CGCG---GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| || |||||||| |||||||| ||| | | | ||| | || || |||| Sbjct 1854177 CGCGACTGCCCGCTACGTCGACCAGGGCGGTAATAAGCGCCCCGGTGCCTTTGCCATCTA 1854236 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || ||||| ||||| |||||||| | ||| ||||||| || ||||||||||| || Sbjct 1854237 CCTTGAGCCTTGGCATGCGGACGTCTTCGACTTCCTCGACCTCCGTAAGAACCACGGAAA 1854296 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || || | ||| | ||||| |||||||| |||||||| || ||||| || ||||| Sbjct 1854297 GGAGGAGGTTCGTGCCCGTGACCTGTTCTACGCCCTCTGGGTTCCCGACCTCTTCATGAA 1854356 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 ||||| ||| || || |||| ||| | || || || || ||||| || | Sbjct 1854357 GCGCGTTGAGGCGGACGGCGAGTGGACTCTCATGTGCCCTGCCGAGTGCCCCGGTCTTGC 1854416 Query 94371 CGACGT-TTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 |||||| | | | | ||||| | | || | |||| | ||| |||||||| Sbjct 1854417 CGACGTCCACTCGGAGGAG-TTTGAGGCTCTCTACGAAAAGTACG-AGCGCGAGGGCAAG 1854474 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | ||| || | ||| |||||| ||| | ||| | || | ||| ||| Sbjct 1854475 GGCCGCAAGACCATCAAGGCTCAGAAGCTCTGGTTTGCTATCCTTGAGGCTCAGACCGAG 1854534 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || ||| |||| ||| | | ||||||| ||| |||| ||||||||||||||||||| Sbjct 1854535 ACTGGTGGTCCCTTCATGCTTTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCAC 1854594 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| |||||| || || || |||||||||||| ||||||| || | || ||| Sbjct 1854595 CTCGGCACTATCAAGTCTTCCAACCTCTGCACCGAGATTATCGAGTACTCTGCCCCCGAC 1854654 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 ||| | || || || ||||| | |||||| Sbjct 1854655 GAGGTCGCCGTCTGCAACCTTGCTTCCATC 1854684 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGT-GTGAAGCCCT-CGGGTCTGTACGACTGGG 95050 ||||||| | ||||||||||||||||| ||| |||| | | || | |||||| Sbjct 1855030 CAGGGCAAGCTCCAGTTCGACCTCTGGGGCCGTGT--CCCTACCGACCTCTGGAACTGGG 1855087 Query 95051 AAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 | | || || | | || ||| ||||||| ||| |||| ||||| || |||| Sbjct 1855088 ACGAGCTCCGTGAGAAGATTGCCAAGTACGGTGTCCGCAACTCGCTCCTTGTCGCTCCCA 1855147 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 ||||||| ||||| || ||||||| |||||| ||||||| ||||| || | ||||| Sbjct 1855148 TGCCCACTGCCTCGACTTCGCAGATTCTTGGCTGGAACGAGTGCTTCGAGCCTTACACCT 1855207 Query 95171 C 95171 | Sbjct 1855208 C 1855208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723101055360