Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 116 4e-21 seq1 84.2 2e-11 >seq12 Length=785499 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | || | | | |||||||| |||||||||||||| | Sbjct 768093 CCACCGCGCAGACGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAC 768034 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||| | | |||| || ||||| ||||| ||||| Sbjct 768033 AGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 767974 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | |||||| ||| Sbjct 767973 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 767914 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || || ||||| || || || |||||||| Sbjct 767913 TCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 113 bits (124), Expect = 4e-20 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | || | | | |||||||| || ||||||||||| Sbjct 768322 GCCTCCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 768263 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| |||||| || || || || | |||| |||||||| ||||| ||||| Sbjct 768262 CAGCGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 768203 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | |||| ||| || | |||||||| |||||| Sbjct 768202 AATGCCCTCCTTGTC-CTGAATCTTCGCCTTAACGTTG-TCGATGGTGTCGGACGACTCG 768145 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | ||| || || || || || || || || |||||||| Sbjct 768144 ACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || |||||| |||||||| || || |||| Sbjct 767832 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTTCCGGCG 767773 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| ||||| || || || ||||| ||| | || | || | Sbjct 767772 AAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGCCTTGAC 767714 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||||| || || | || | || || || || ||||| | Sbjct 767713 GTTG-TCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTCTTTCCGGTGAGAGTCT 767655 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 767654 TGACGAAAATCTGCAT 767639 >seq1 Length=5410471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 ||||||||| | || || || || |||||||||||||| | | |||| | || Sbjct 364544 GTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTGGCTCAAAAAGCGCGGG 364603 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | |||| ||||||||| ||| ||||||| | || || |||||||| || || ||||| Sbjct 364604 CTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACACC 364663 Query 52539 GACTTTGCGTGCCT 52552 |||||||| || || Sbjct 364664 GACTTTGCATGTCT 364677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262300747520