Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12 134 1e-26 seq1 102 8e-17 seq7 91.5 1e-13 >seq12 Length=785499 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || || |||||| || || ||||| || ||| Sbjct 768063 GTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTACCA 768004 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || ||||| ||||||||||||||| ||| ||| |||| Sbjct 768003 GCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTG 767944 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||||| |||||| || | || | ||| |||||||| ||||| Sbjct 767943 ACGTTG-TCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTCTTGCCGGTGAGAGT 767885 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 767884 CTTGACGAAGATCTGCAT 767867 Score = 123 bits (136), Expect = 2e-23 Identities = 296/443 (67%), Gaps = 15/443 (3%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 || || ||| | || || || ||| ||| ||||| |||||||||| || ||||| Sbjct 745765 GCGGAGCGTCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCGTTTGCC 745706 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 | || || | | || | || | ||||| |||||||| || ||||||||| Sbjct 745705 TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTCACCTTCTCCAACGAGCTC 745646 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAAC-ACTAGAGT 47311 ||||| | ||||| || || |||||| ||||||| |||||| || || | || || Sbjct 745645 ATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCTTGTCTCCTCTTCACCCACCTGAAG 745586 Query 47312 CGATCAAAAGTTGGACGTGCCC--ACCGTCAGCGACATGTT--TGC-CGAAGCCGTCGCC 47366 || | | | ||| ||| ||| || | | | | | ||| |||||| Sbjct 745585 CG--------TCGCCCCCACCCCGACC-TCATTGAGAAGATCATCCGCGAGGCCGTCAAG 745535 Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAG 47426 |||||| |||||| || |||||||||| |||| ||| | | || |||||||| | Sbjct 745534 ATTGAGCAGGAGTTCCTCACCGAGGCTCTCCCCGTGTCTCTCATCGGCATGAACGCCAAC 745475 Query 47427 ATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC 47486 | ||| | ||||||| || |||||||||||||| |||||||| || | Sbjct 745474 CTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAG 745415 Query 47487 AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAG 47546 ||||||||| | | || || ||||| |||||| | | || ||||| |||||||| Sbjct 745414 AAGATTTACAAGTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAG 745355 Query 47547 ACCAACTTTTTCGAGAAGCGCGT 47569 ||||||| |||||| ||||| Sbjct 745354 GCCAACTTCTTCGAGTCCCGCGT 745332 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || ||| || ||||| ||||| Sbjct 767835 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTTCCG 767776 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| |||||||| ||||||||||||||| || || |||| Sbjct 767775 GCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 767716 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| ||||| | ||| ||||| | || | || || ||||| ||||| Sbjct 767715 ACGTTGT-CGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTCTTTCCGGTGAGAGT 767657 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 767656 CTTGACGAAAATCTGCAT 767639 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||| ||| || || ||||| |||||| Sbjct 768291 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCA 768232 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || ||||| ||||||||||||||| || ||| ||| Sbjct 768231 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTA 768172 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | |||||| |||| || | ||| ||||| || || || Sbjct 768171 ACGTTG-TCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGGGT 768113 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 768112 CTTAACGAAGATCTGCAT 768095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| || | || || || || ||||| || || Sbjct 767332 GTAGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCC 767273 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 767272 GCGAAAATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 767213 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| || | |||||||| |||||| |||| ||| | || |||||||| || Sbjct 767212 ACGTTG-TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTAAG 767157 >seq1 Length=5410471 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 47084 AAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTT 47143 ||||||||| ||||| | |||||||| |||| | | | || | | ||| || Sbjct 364471 AAAGGCCGACTGGGCACTAAAGTACATCACGGACGAGAT-GCCCTTCCGAAC--ACGGTT 364527 Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTA 47203 |||||| || || |||||||||| ||||||||||||| ||||| || || || | Sbjct 364528 GATCGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTG 364587 Query 47204 CATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGA 47263 | |||| || |||||| |||||| || || ||||||||| ||||| | || Sbjct 364588 GCTCAAAAAGCGCGGGCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGA 364647 Query 47264 CGAAGGCCTGCACACCAACTTTGCCTGTCT 47293 ||| ||||| |||||| ||||||| ||||| Sbjct 364648 CGAGGGCCTCCACACCGACTTTGCATGTCT 364677 >seq7 Length=1006632 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| ||||| || || ||||||||| Sbjct 519776 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTG 519717 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| |||| |||| |||||||| | ||| || || | ||| | Sbjct 519716 TCCTGGATCTTCGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCCACCTCAAGGGTGAT 519658 Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101 || |||||||| || || || || Sbjct 519657 GGTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500704899840