Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 260 2e-64 seq12 143 3e-29 seq1 127 3e-24 >seq3 Length=2410059 Score = 260 bits (288), Expect = 2e-64 Identities = 700/1060 (66%), Gaps = 34/1060 (3%) Strand=Plus/Minus Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 ||||| |||| || ||||| |||||||| || || | |||||| || | ||| || || Sbjct 1854881 ATAAACGCATCGGCCAGACCCTGGACACCAAGACCGACTGGGCGGTGACGCATGTTGGAG 1854822 Query 116299 TTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 || ||||| ||| || || || | || | ||| || | | || || ||| Sbjct 1854821 TTGCGAGC---CTCAGGGACAGGGTAGTAGTTGCGCGTGATGACACAGTCAAGGTTCTTG 1854765 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA--- 116412 ||||||||||| ||||| || || ||||| | | |||| | |||| | ||| Sbjct 1854764 GTGACAACCTTGGTGATCTCGTGCAGCTTCTTGAAATCGTAGCTGCCGCCACCCTCAAAG 1854705 Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 |||||| | ||| || ||||| || || || || || || | | ||| || || Sbjct 1854704 TTGACAAAGGCAGGGAGAGCGATGGAAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCA 1854645 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 | |||||| ||||| || || || | || ||| ||| || ||||| | || || || Sbjct 1854644 GAGTACTCGATAATCTCGGTGCAGAGGTTGGAAGACTTGATAGTGCCGAGGTGCTGCTGG 1854585 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||||| ||| || |||||||| ||||| | || || ||||| || || Sbjct 1854584 TTGGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGA 1854525 Query 116593 GACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT- 116650 | || || ||||| ||| | | || | | || | ||| ||| || |||| Sbjct 1854524 GCCTCAAGGATAGCAAACCAGAGCTTCTGAGCCTTGA----TGGTCTTG---CGGCCCTT 1854472 Query 116651 --CCTC---CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAG 116703 |||| |||||||||| |||||| ||||||||||| || | | | | || | Sbjct 1854471 GCCCTCGCGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTC--CGAGTGGACGTCGGCA 1854414 Query 116704 AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 116763 || || || || | || || | ||||| ||| | || || ||||||| |||||| Sbjct 1854413 AGACCGGGGCACTCGGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTC 1854354 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 ||||||||||| || | |||||| || |||| || || || ||| | || || | Sbjct 1854353 ATGAAGAGGTCGGGAACCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTT 1854294 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || ||| | || | ||||| | || ||||| ||||| || || ||||| Sbjct 1854293 CCGTGGTTCTTACGGAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAG 1854234 Query 116884 ACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 | || | | || ||| | ||| |||||| || || | || || |||| Sbjct 1854233 ATGGCAAAGGCACCGGGGCGCTTATTACCGCCCTGGTCGACGTAGCGGGCAGTCGCGTCG 1854174 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAG 116998 | | || ||||| |||| ||||| | || | || || || || ||| ||||| Sbjct 1854173 TAGGCACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAGCAATGTACGAG 1854114 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | | |||| | || | ||||||||| | ||| ||||| || || ||| ||||| | Sbjct 1854113 CCCT--TGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCT 1854056 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 | ||||| | ||||| || ||||||| || ||||| |||||| |||| | |||| || Sbjct 1854055 GAGCGCAGGTCTTGAGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCATCGCGACGA 1853996 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 ||||||| |||||| || || | ||||||||||||||||| || || | |||| Sbjct 1853995 GGAAGCATGACGACATCTGGGGGTGCTGGGTACCAGCGTTGAAGAGAGTAGGCGAGGCGT 1853936 Query 117179 GGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 || |||| | | |||||| | ||||||||| | ||| ||||| || | Sbjct 1853935 GGGTGAAGTAGCGCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTGTCGC 1853876 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||| ||||| || || || ||||| | ||||| ||||| Sbjct 1853875 CGTGGATACCAATAGAAACACGCATGATCATGTGCTGGGG 1853836 >seq12 Length=785499 Score = 143 bits (158), Expect = 3e-29 Identities = 350/521 (67%), Gaps = 16/521 (3%) Strand=Plus/Plus Query 127249 CTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTTCTT 127308 |||||||||||| | ||| || | || ||| |||||||||| || || ||||| | Sbjct 745340 CTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 745399 Query 127309 TGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCAA 127367 || || |||| | | | || | | ||| ||||| || | ||| |||||| Sbjct 745400 CGACTTGTAAATCTTCTCGTTGCCGAGGGCGAC-GAGCAGACGGTCGGCGACAAACTCAA 745458 Query 127368 TGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG-AGCGCGTCCAAG 127426 |||||| |||| | | |||||| |||||||| ||| ||| || || || | Sbjct 745459 TGTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGAG-ACACGGGGAGAGCCTCGGTG 745517 Query 127427 ATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGTCCACCCCA 127486 | |||| ||| |||||| | || || || || | ||| | ||| ||| Sbjct 745518 AGGAACTCCTGCTCAATCTTGACGGCCTCGCGGATGATCTTCTCAATGAGGTCGGGGTGG 745577 Query 127487 GGTCTATTGCGTAAAGTCT-TGAAGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTC 127545 || | | || | | || ||||||| |||||| || ||||||||||||||| Sbjct 745578 GGGCGAC-GCTTCAGGTGGGTGAAGAGGAGACAAGCAAAGTCGGTGTGGAGACCCTCGTC 745636 Query 127546 ACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCA 127605 ||| |||||||| || || |||||| || || |||||||| || |||||||| | ||| Sbjct 745637 ACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGGCCACGCTTCTTGAGCCA 745696 Query 127606 GAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAG 127665 ||| || | ||| || |||||||||||||| ||||| || || || |||| || Sbjct 745697 GAAGATGGAGGCAAACGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAAGGCAATGAG 745756 Query 127666 ACGCTCGGCAAAGGAGCGGGACTTTGT-----ATCAAACCACTTCATCGCCCACTGTGCC 127720 |||||| |||||||| || | | || ||| ||| | | ||||| | ||| Sbjct 745757 ACGCTCCGCAAAGGA-CGAGCTGTCGTCCGAGATCCAACGA----AGAGCCCAGTCGGCC 745811 Query 127721 TTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 || |||| ||| || |||| ||||| ||| |||| ||||| Sbjct 745812 TTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTTGAAGAG 745852 >seq1 Length=5410471 Score = 127 bits (140), Expect = 3e-24 Identities = 197/274 (72%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 127390 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 127449 ||| || ||||||||| |||||| || ||||| || |||| ||||||| || ||||| Sbjct 364801 GTTGATGCCGATGAGGGCACATGGCAGGGCGTCGGTGAGGAACTCCTTCTCGATCTCCAC 364742 Query 127450 AGCTTCCCGTACGATGGCGTGAATAGTGTCCACCCCAGGTCTAT--TGCGTAAAGTCTTG 127507 |||||| || || ||||| || | ||| | ||| || ||| | | || | Sbjct 364741 CGCTTCCGACACAATCGCGTG--TACT-TCCTCTTCAGTACTTCGGTGCTTCAGGTGC-G 364686 Query 127508 AAGAGTTCC-ACA-GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCG 127565 || | | ||| ||||| || |||||| |||||||| ||||||||||| || || | Sbjct 364685 AATACAGCAGACATGCAAAGTCGGTGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGG 364626 Query 127566 AGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGC 127625 ||||| ||| || |||| || || ||||| || | |||||| || || ||| || | Sbjct 364625 AGAAGGTCAGGCCGCGCATAAGCCCGCGCTTTTTGAGCCAGAAGATGGCGGCAAACGACC 364566 Query 127626 CAGAGAAGAAGATCCCCTCCACACACGCGAACGC 127659 | ||||||||||| ||||| || ||||| ||||| Sbjct 364565 CCGAGAAGAAGATGCCCTCGACGCACGCAAACGC 364532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507077298560