Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 116 6e-21 >seq3 Length=2410059 Score = 116 bits (128), Expect = 6e-21 Identities = 329/498 (66%), Gaps = 12/498 (2%) Strand=Plus/Minus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || |||||||| |||||||| | | ||| | | | | || ||||| || ||||| Sbjct 1855602 GTCGACGGTGAACTGGATGGCGTTGGCCGAAGGACGGGTACGAAGGTAGTAGATACCGGT 1855543 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| || || || ||| ||||| | ||||||||||| || | | | ||||| Sbjct 1855542 CTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATGGAAGTAAGCTGGGAGAACGAGGGGTT 1855483 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCA 204020 || || ||||||||||| ||||| ||||||||||| ||| || || || || || | Sbjct 1855482 GGACAGGTGAATGTTCAACGACTGAGACTGGTCGATGAA-GGCACCACGGTCGGCAGCAA 1855424 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTGGTGTGT 204079 | || | | |||||||||||||||||| || |||||| || | || || | | Sbjct 1855423 GGTCAATGACAGACTTCTGCGAAATCTCCCAGACAGTCTTGTAAATAGACT-TGATCTCG 1855365 Query 204080 TGAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | || | |||| | || || |||||| || || || | | | | Sbjct 1855364 TCGGGGA----TTCCAGGAATGTGCTGGATCGAACCACCAGAAGCAATGACGAGCTGCTT 1855309 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | | ||| |||| | | | | |||| || || || | || |||| || || Sbjct 1855308 CATGTTCTCGTCCCAGAGGTCAAGGTTGATGAGGTCACGAAGGAGCCAGGGGCAGACGAC 1855249 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| ||||| ||||| || || | || | | | || | |||| | || ||||| Sbjct 1855248 CTGGAAGTCACCGGAAAGAACACGACGAGAGTAGAGCATCGAGGTGTAAGGCTCGAAGCA 1855189 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||| ||| | |||||| | || ||| |||||||||||||| | || || || Sbjct 1855188 CTCGTTCCAGCCAAGAATCTGCGAAGTCGAGGCAGTGGGCATGGGAGCGACAAGGAGCGA 1855129 Query 204316 GTTGCGCACACCGTATTT 204333 |||||| |||||||| || Sbjct 1855128 GTTGCGGACACCGTACTT 1855111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155040968960