Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12 152 1e-31 seq1 127 5e-24 seq7 84.2 5e-11 >seq12 Length=785499 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||| | || ||| | ||||| Sbjct 767850 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 767791 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| || ||||||||||| ||| ||| || || ||| Sbjct 767790 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 767731 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||||| | | || || |||| || || ||| Sbjct 767730 TGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTC 767671 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || ||||| || Sbjct 767670 TTTCCGGTGAGAGTCTTGACGAAAATCTG 767642 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| ||||||||| | || || | || || Sbjct 768306 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCC 768247 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||||||||||||||||||||| ||| ||| || || ||| Sbjct 768246 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 768187 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || || | || |||||| Sbjct 768186 TGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTC 768127 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 768126 TTGCCCGTGAGGGTCTTAACGAAGATCTG 768098 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || ||||||||||| || | ||||||||| | || || | || || Sbjct 768078 AGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTCC 768019 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||||||||| ||| ||| || || ||| Sbjct 768018 TCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 767959 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | |||||||||| Sbjct 767958 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTC 767899 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || || || Sbjct 767898 TTGCCGGTGAGAGTCTTGACGAAGATCTG 767870 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| |||| ||||||||| | | || | || || Sbjct 767622 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767563 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| ||||||||||||||||| || ||| || || ||| Sbjct 767562 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 767503 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || || | ||||| ||| Sbjct 767502 TGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATGGTC 767443 Query 199598 TTACCCGTGAG 199608 || || || || Sbjct 767442 TTGCCGGTAAG 767432 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| || | ||||||||| | | || | || || Sbjct 767347 AGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767288 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| ||||||||||||||||| || || || || ||| Sbjct 767287 TCGAGCTGCTTGCCCGCGAAAATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 767228 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 767227 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 767168 Query 199598 TTACCCGTGAG 199608 || || || || Sbjct 767167 TTGCCGGTAAG 767157 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||||||||||||| | || ||||| | ||| || |||| |||||| ||||| Sbjct 767765 CTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAG 767824 Query 200995 AAAGAGTCTACTCTTCACCTTGT 201017 || ||||| ||||||||||| || Sbjct 767825 AAGGAGTCCACTCTTCACCTCGT 767847 >seq1 Length=5410471 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 4378697 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 4378638 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| ||||||||||| || || || || ||| Sbjct 4378637 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4378578 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 4378577 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTC 4378518 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || |||||||| || || || Sbjct 4378517 TTGCCCGTGAGGGTCTTGAC 4378498 >seq7 Length=1006632 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || |||||||| |||||||||||||||||||||||||| || || || || Sbjct 519779 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCC 519720 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| ||| |||| |||||| | | || || || | ||| Sbjct 519719 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTG 519660 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCAC 199617 || ||||| || ||||| || || || Sbjct 519659 ATGGTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921358321072