Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq12 129 7e-25 seq7 109 6e-19 >seq1 Length=5410471 Score = 134 bits (148), Expect = 2e-26 Identities = 140/181 (77%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 4378677 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 4378618 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 4378617 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 4378559 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| ||||| || | ||||| || |||||||| || || || | Sbjct 4378558 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 4378499 Query 46581 C 46581 | Sbjct 4378498 C 4378498 >seq12 Length=785499 Score = 129 bits (142), Expect = 7e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || ||||||||||| |||||||| Sbjct 767830 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTTCCGGCGAA 767771 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | || |||||||||| ||||| ||||| ||| Sbjct 767770 GATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 767712 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || |||| || ||||| || || || || || || | Sbjct 767711 TGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTCTTTCCGGTGAGAGTCTTGA 767652 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 767651 CGAAAATCTGCAT 767639 Score = 129 bits (142), Expect = 7e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || ||||| |||| ||||||||||| || || || Sbjct 768058 CTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAA 767999 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| ||||||| ||||| ||| Sbjct 767998 GATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 767940 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||| || || || | |||||| || ||||| || || || || | Sbjct 767939 TGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGA 767880 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 767879 CGAAGATCTGCAT 767867 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| || |||||||| || ||||| Sbjct 768286 CTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCAGCGAA 768227 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| |||||| ||| | ||| Sbjct 768226 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTT-AACGT 768168 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | || || || |||||||| || || |||| Sbjct 768167 TGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTAA 768108 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 768107 CGAAGATCTGCAT 768095 Score = 113 bits (124), Expect = 5e-20 Identities = 136/184 (74%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| |||||||||||||||||||| Sbjct 767602 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 767543 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| |||||| ||| | | Sbjct 767542 AATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 767483 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | |||||||| ||||| || || | | ||| Sbjct 767482 GTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTAAG-GCTGTAAA 767424 Query 46582 AAAG 46585 |||| Sbjct 767423 AAAG 767420 Score = 105 bits (116), Expect = 8e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || || || |||| |||||||||||||| ||||| Sbjct 767327 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAA 767268 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 767267 AATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 767209 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | ||||| || || || || | |||||||| ||||| || || Sbjct 767208 TGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTAAG 767157 >seq7 Length=1006632 Score = 109 bits (120), Expect = 6e-19 Identities = 126/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| |||| |||||||||||||||||||| || | ||||||| Sbjct 519799 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 519740 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||||| || | | |||||||||| ||||||| ||||| ||| | | | ||||| Sbjct 519739 GGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCC 519681 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 || ||||| || | |||||||| ||||| || || || || || Sbjct 519680 GAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238286952320