Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12 159 3e-34 seq1 123 2e-23 >seq12 Length=785499 Score = 159 bits (176), Expect = 3e-34 Identities = 398/601 (66%), Gaps = 24/601 (4%) Strand=Plus/Plus Query 132627 CTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGC 132686 ||| || || || | || |||| || || || | | |||||| || |||||||||| Sbjct 745340 CTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 745399 Query 132687 TGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 | ||||| ||| | |||||| || |||||||||| | |||||| || ||||| Sbjct 745400 CGACTTGTAAATCTTCTCGTTGCCGA---GGGCGACGAGCAGACGGTCGGCGACAAACTC 745456 Query 132744 GATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGG 132802 ||||| || ||||| | || || | | | || | ||| ||| || || || |||| Sbjct 745457 AATGTACTGGCACATGAGGTTGGCGTTCATG-CCGATGAGAGACACGGGGAGAGCCTCGG 745515 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 |||| || ||||| || ||| || ||| || ||| | | || | | | | | Sbjct 745516 TGAGGAACTCCTGCTCAATCTTGACGGCCTCGCGGATGATCTTCTCAATGAGGTCGGGGT 745575 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 || || || || || |||| | | |||||||||||| || | ||||||| Sbjct 745576 GGGGGCGACGCTTCAGGTGGGTGAAGAGGAGACAAGCAAAGTCGGTGTGGAGACCCTCGT 745635 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | || ||||| |||||| ||| || | ||| ||||||||||| || || ||||||| Sbjct 745636 CACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGGCCACGCTTCTTGAGCC 745695 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | || |||| ||| || || || ||||||| ||||| ||||| || || || | | Sbjct 745696 AGAAGATGGAGGCAAACGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAAGGCAATGA 745755 Query 133043 GGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 | ||||| | || | | | | | |||||| || || ||||| |||||||| | Sbjct 745756 GACGCTCCGCAAAGGACGAGCTGTCGTCCGAGATCCAACGAAGAGCCCAGTCGGCCTTCT 745815 Query 133103 CTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA-- 133160 |||| ||| || || || ||||| || || || ||| | || ||| || Sbjct 745816 TCTTGATGCAGGGGATGGTCTCGATAGCTTTGAA------GAGGT--ACTGACGACGAGC 745867 Query 133161 ------ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214 ||| | |||||||||||| ||| || || | |||||||| | ||||||| | Sbjct 745868 GTTGTCACGGATGTAGGTGTCGATAAGGAGAGAGTAGGTCTCCGAGTGAATGTTCTCCCT 745927 Query 133215 G 133215 | Sbjct 745928 G 745928 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || || || |||| |||||| | || Sbjct 768095 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 768154 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| | || || | ||||| ||||| ||||| | ||||| Sbjct 768155 GACACCATCGACAACG-TTAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 768213 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| || || || |||||||| Sbjct 768214 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAA 768273 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| |||| || || | || || ||| || | || |||| Sbjct 768274 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTGCGTGGAGGCC 768323 Score = 122 bits (134), Expect = 9e-23 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || ||||| ||||||||| |||| |||||| || | |||| | | | |||| | || Sbjct 767157 CTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACG-TCAA 767215 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| || ||| ||||||| ||||| ||||||| |||||| Sbjct 767216 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATTTTCGCGGG 767275 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||| ||||| || |||| || ||||| ||||||||||| || ||||| Sbjct 767276 CAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATTCAGAAGGA 767326 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| | || |||||| | | Sbjct 767867 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAGGTCGAGTCGTCG 767926 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 767927 GACACCATCGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 767985 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || |||| ||||| || |||||||| Sbjct 767986 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAA 768045 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| |||| ||||| | || || ||| || | || || Sbjct 768046 CATTCAGAAGGAGTCGACCCTGCACCTTGTTCTCCGTCTGCGCGGTGG 768093 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 || || ||||| |||||||| | || || ||| | | |||| | | | | | || Sbjct 767432 CTTACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCTGACACCATCGACAATGTGAAG 767491 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || |||| ||||| ||||| |||||| ||||||| ||||| ||||||| ||| ||| Sbjct 767492 GCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATTTTCGCCGGC 767551 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 || ||||| || |||| || ||||| |||||||||||||| ||||| Sbjct 767552 AAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATCCAGAAGGA 767601 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||| || | || || ||| || || Sbjct 767639 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACCATTACTCTGGAAGTTGAGTCCTCC 767698 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| ||||| ||||||| Sbjct 767699 GACACTATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 767757 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || || | || || || ||||||||| Sbjct 767758 GCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAA 767817 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 767818 CATCCAGAAGGA 767829 >seq1 Length=5410471 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCA 38314 || || || ||||||||||| || |||||| |||| || ||| | |||||| | | | Sbjct 4378498 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 4378557 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || |||| ||||| ||||| || ||| | ||||| ||||| ||||| Sbjct 4378558 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCAT 4378616 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| ||||| ||||| || |||| |||||||| |||||||||||||| ||||| Sbjct 4378617 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 4378676 Query 38435 AGCGACGCTGCA 38446 |||| || || Sbjct 4378677 GTCGACCCTCCA 4378688 Score = 120 bits (132), Expect = 3e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || || ||||||||| || | ||||||||| | ||| ||||| |||||| || Sbjct 364682 ACAGCAGACATGCAAAGTCGGTGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGA 364623 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | |||| |||| |||| || ||||| ||||||||||| || |||||||| || |||| Sbjct 364622 AGGTCAGGCCGCGCATAAGCCCGCGCTTTTTGAGCCAGAAGATGGCGGCAAACGACCCCG 364563 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGC 133037 | ||||||| |||||||||| ||| || || Sbjct 364562 AGAAGAAGATGCCCTCGACGCACGCAAACGC 364532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 107669 GTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCGCTTCGT 107728 |||||| ||||| || ||||| | ||||| | || |||||||||||||| ||| Sbjct 2989027 GTTGCCGAGGTCACCAACGTGGCGGATCTTGTCGGTCGGCGCGCCGTGGTCCTTCTTGTA 2989086 Query 107729 CGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCG---CGTCGCCGAACTCGTG 107785 |||||| || || ||||||| | |||||| | || || ||||||||||||||| Sbjct 2989087 CGGGTTAAAGTGGCCGCCGGCAGCGAGGCAGCCCTCGCCCGAGATGTCGCCGAACTCGTG 2989146 Query 107786 CACGTGGAAGCCGTGCAGGCCGCGCG 107811 ||| ||||| |||||| |||| ||| Sbjct 2989147 CACATGGAAACCGTGCTTGCCGGGCG 2989172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172699965440