Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 324 2e-83 >seq2 Length=4291162 Score = 324 bits (358), Expect = 2e-83 Identities = 606/888 (68%), Gaps = 2/888 (0%) Strand=Plus/Minus Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 |||||||| ||||| || || |||| || | || ||||| | ||||| | || Sbjct 401381 GGGGTCATGATACCGCCAGCGGTCTCGATACCCATGGAGAGAGGGGCAACGTCGAGAAGG 401322 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | ||||| || || ||| ||||| | | ||||| || ||||| | || Sbjct 401321 AGGAGGTCCTGGGTAGCCTCGGAGGTCTCACCATTGAGGATGGAAGCCTGGACGGCGGCA 401262 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACC-GTTAAAATA 7101 ||||| ||||| ||||| |||||||| || | || | || || | || || Sbjct 401261 CCGTAGGCGACGGCCTCGTCGGGGTTGATGGAGCGGTTGGGCTCACGGCCAGAGAACATG 401202 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 || || | | | || || || ||||| || || || |||||||| | ||||| || Sbjct 401201 -TCGGAGACGAGCTTCTGGATCTTGGGGATACGGGTGGAACCACCGACAAGGACGATCTC 401143 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 || || || || || ||||| ||||| || || || ||||| || ||||| Sbjct 401142 GTTGACGGAAGACTTGTCAATCTTCGAGTCGCGGAGGACCTTCTCGACGGGCTCCATGGT 401083 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 ||||| | |||| || || ||||| ||||| |||||||| || || || ||||| Sbjct 401082 GGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGGGCACGGGTGATCGAGGTGTAGAA 401023 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 |||| ||||||| | | ||| ||||| || |||| || || || | || || | || Sbjct 401022 GTCAATGCCGTCGAAGAGCGAGTCAATCTCGATGGAGGTCTGAGCGGCAGACGAGAGGGT 400963 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || |||||||| || || || | |||||| |||||||| | ||| || ||| Sbjct 400962 GCGCTTGGCACGCTCACAGGCAGTGCGGAGACGACGGAGGGCACGAGCGTTGGAGGTAAT 400903 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 || ||||| | ||||| || ||||| | ||||| | ||| | || || Sbjct 400902 GTCCTTCTTGTTCTTACGCTTGAACTCCTGGACAAAGTGGTTGACGAGACGGTTGTCAAA 400843 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || |||||||| | ||| || || || ||||| || ||||| || |||||||| | || Sbjct 400842 GTCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCCTCCTC 400783 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 |||| | | | ||| || || || || || ||||| ||||| || ||||| |||||| | Sbjct 400782 AATGGTAAGGAGCGAGACGTCGAAGGTTCCTCCACCAAGGTCGAAGATGAGGACGTTCTT 400723 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | || ||||| ||||||||||| |||||||| || || || || || || || Sbjct 400722 CTCACCCTCAGACTTCTTGTCGAGACCGTAGGCGATAGCAGCGGCGGTAGGCTCGTTGAT 400663 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 ||||||||| || || ||||| || || | || || || || || || || ||||| Sbjct 400662 GATACGAAGAACGTCGAGACCAGCGATGGTACCGGCGTCCTTGGTGGCCTGACGCTGCGA 400603 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| |||||||| ||||| || ||||| || | ||||| | ||| || || | Sbjct 400602 GTCGTTGAAGTAGGCGGGGACGGTGACGACGGCCTTGGTGACGGTGCCACCAAGGTAGGC 400543 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || ||| | || ||||| ||| | || ||||| || || ||||| || Sbjct 400542 CTCGGCGGTCTCCTTCATCTTGATGAGGACCATGGAGGAGATCTCCTC 400495 Score = 165 bits (182), Expect = 1e-35 Identities = 197/267 (74%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||| | ||||| ||| ||||||| |||| | ||||| | Sbjct 400381 GATGACCTTGAAGGGCCAGTGCTTCATGTCGGACTGGACCTCGGGGTCGGCGAACTTGCG 400322 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||||||||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 400321 GCCGATAAGACGCTTGGCGTCGAAGACGGTGTTGTAGGGGTTCATGGCGACCTGGTTCTT 400262 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || ||||| ||||| ||| | | || || |||||||| || ||||| || Sbjct 400261 GGCGGCATCACCGATGAGACGCTCAGAGT---CGGTGAAGGCGACGTAAGAGGGGGTAGT 400205 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| || || || || ||||||||||| ||||||||| |||| || Sbjct 400204 GCGGTTACCCTGGTCGTTGGCGATGATCTCAACGCGGTCGTTCTGCCAGACGGCGACACA 400145 Query 8116 CGAATACGTTGTTCCTAAATCAATACC 8142 ||| || || || || | || ||||| Sbjct 400144 CGAGTAGGTGGTGCCAAGGTCGATACC 400118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132672973440