Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 244 1e-59 seq12 150 2e-31 seq1 113 6e-20 >seq3 Length=2410059 Score = 244 bits (270), Expect = 1e-59 Identities = 696/1058 (66%), Gaps = 44/1058 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || | || |||||||| || || | ||||| || Sbjct 1853836 CCCCAGCACATGATCATGCGTGTTTCTATTGGTATCCACGGCGACAACATTGAAAAGGTC 1853895 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || |||||| | | || |||| |||||| | || || ||||| Sbjct 1853896 ATTGAGACCTACAACCTCATGTCCGAGCGCTAC-TTCACCCACGCCTCGCCTACTCTCTT 1853954 Query 111731 CAACGCTGGTACACCAAGACCCCAA-ATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 |||||||||||| ||| ||||| | ||||| || ||||| | || | ||||| | Sbjct 1853955 CAACGCTGGTAC-CCAGCACCCCCAGATGTCGTCATGCTTCCTCGTCGCGATGAAGGATG 1854013 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || ||| | || || |||| |||||||| || || || ||||| ||| || | Sbjct 1854014 ACTCTATCGACGGTATCTACGACACTCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCG 1854073 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | |||||||| | |||||||| | || | ||||| | |||||| || || || Sbjct 1854074 GCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAG--GGCTCGTACATTGCTGGCAC 1854131 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || ||| | || | |||||| |||| ||||| || | | |||| || || ||||| Sbjct 1854132 CAACGGTTACTCCAACGGTATTGTTCCCATGCTCCGTGCCTACGACGCGACTGCCCGCTA 1854191 Query 111968 TGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || |||| | || | ||| || | | || |||| |||||||| ||||| Sbjct 1854192 CGTCGACCAGGGCGGTAATAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCA 1854251 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||||| || | || ||||| || | ||| ||||| || | ||||||| || Sbjct 1854252 TGCGGACGTCTTCGACTTCCTCGACCTCCGTAAGAACCACGGAAAGGAGGAGGTTCGTGC 1854311 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 ||| || || |||| ||| |||||| |||| || |||||||||||| | ||||||| | Sbjct 1854312 CCGTGACCTGTTCTACGCCCTCTGGGTTCCCGACCTCTTCATGAAGCGCGTTGAGGCGGA 1854371 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 ||| | ||| ||||| | || || | | || |||||||| |||| | | || Sbjct 1854372 CGGCGAGTGGACTCTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGACGTCCACTCGGA 1854431 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-----GACG 112259 ||||||||| || |||||| |||||||||| || |||| | || ||| Sbjct 1854432 GGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGCGA-----GGGCAAGGGCCGCAAGACC 1854486 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | | || | || | | ||| ||||| || || |||| |||||||||||| || Sbjct 1854487 AT-CAAGGCTCAGAAGCTCTGGTTTGCTATCCTTGAGGCTCAGACCGAGACTGGTGGTCC 1854545 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||||||||| ||||| |||| ||| || || || | | || || Sbjct 1854546 CTTCATGCTTTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACTAT 1854605 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 |||| |||||||||||| || || || | || | | | | || ||| || || Sbjct 1854606 CAAGTCTTCCAACCTCTGCACCGAGATTATCGAGTACTCTGCCCCCGACGAGGTCGCCGT 1854665 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACAAA 112489 || ||||| || || ||||||||||| ||| | || || | | | || Sbjct 1854666 CTGCAACCTTGCTTCCATCGCTCTCCCTGCCTTTGTCAACTTTGAGGGT--GGCGGCAGC 1854723 Query 112490 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAG 112549 || |||| | || || ||||| | || || |||||| || ||||| || | Sbjct 1854724 TAC----GATTTCAAGAAGCTGCACGAGATCACCAAGGTTGTCACCAAGAACCTTGACTG 1854779 Query 112550 AGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACA 112606 || || | || | ||||| || |||| ||||| || || || ||| | || Sbjct 1854780 TGTCATCACGCGCAACTACTACCCTGTCCCTGAG---GCTCGCAACTCCAACATGCGTCA 1854836 Query 112607 CCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 ||| ||| | ||||| |||||||| ||||| || |||| Sbjct 1854837 CCGCCCAGTCGGTCTTGGTGTCCAGGGTCTGGCCGATG 1854874 >seq12 Length=785499 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||| ||||| ||| | || ||||| ||||||||||||||||||||||| || Sbjct 745771 TCCTTTGCGGAGCGTCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCG 745712 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || | | || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 745711 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTCACCTTCTCCAAC 745652 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||||||||||||||| |||||| || ||||| Sbjct 745651 GAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGC 745611 >seq1 Length=5410471 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 102190 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 102249 |||| |||||||| || ||||| ||||||||||| || || || ||| || | |||| Sbjct 364530 TCGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTGGC 364589 Query 102250 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 102309 |||| ||||| || || |||| || || ||||||||||||||| ||||| || |||| Sbjct 364590 TCAAAAAGCGCGGGCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACG 364649 Query 102310 AGGGACTCCACCAAGAGTTTGC 102331 |||| |||||| || ||||| Sbjct 364650 AGGGCCTCCACACCGACTTTGC 364671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742275851520