Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 246 4e-60 seq5 168 8e-37 seq12 114 2e-20 >seq3 Length=2410059 Score = 246 bits (272), Expect = 4e-60 Identities = 1151/1812 (64%), Gaps = 38/1812 (2%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 ||||| || || ||||| || |||||||| |||||| |||| | ||||| |||| Sbjct 1855562 CGAAGGTAGTAGATACCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATGGAAGTA 1855503 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || | ||| | | || | || | ||||| |||||||||||| |||||||| Sbjct 1855502 AGCTGGGAGAACGAGGGGTTGGACAGGTGAATGTTCAACGACTGAGACTGGTCGATGAAG 1855443 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||| || || || | ||| |||| | |||| || ||| ||||||||||||||| Sbjct 1855442 GCACCACGGTCGGCAGCAAGGTCAATGACAGACTTCTGCGAAATCTCCCAGACAGTCTTG 1855383 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACG-ATGTTTTGAATAGAGCCACCAGCCTT 109646 || | | |||||| || ||||| || |||| | |||| || || || ||||||| Sbjct 1855382 TAAATAGACTTGATCTCGTCGGGGAT-TCCAGGAATGTGCTGGATCGAACCACCAGAAGC 1855324 Query 109647 CACCATGAGATCCTTCATCTCTTTCG-ACCAGAGACCGACCTTTTTGAGATCGTCAACAA 109705 | | ||| | |||||| | | ||| |||||| | | || |||| |||| || Sbjct 1855323 AATGACGAGCTGCTTCATGT-TCTCGTCCCAGAGGTCAAGGTTGATGAG---GTCACGAA 1855268 Query 109706 GATGCTTGTTGACCACGAC---AAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 | || | | ||||| || ||||| | ||| || || ||||| | | Sbjct 1855267 GGAGCCAGGGGCAGACGACCTGGAAGTCACCGGAAAGAACACGACGAGAGTAGAGCATCG 1855208 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 ||||| || ||||| ||||| || ||| || || || | ||| || || ||||||| Sbjct 1855207 AGGTGTAAGGCTCGAAGCACTCGTTCCAGCCAAGAATCTGCGAAGTCGAGGCAGTGGGCA 1855148 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT 109882 ||||||| | || || ||| |||| ||| | | | | | |||||| | ||| Sbjct 1855147 TGGGAGCGACAAGGAGCGAGTTGCGGACACCGTACTTGGCAATCTTCTCACGGAGCTCGT 1855088 Query 109883 CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACAC 109942 |||| | | | | ||| ||| |||| | || || || | Sbjct 1855087 CCCAGTTCCAGAGGTC------GGTAGGGACACGGCCCCAGAGGTCGAACTGGAGCTTGC 1855034 Query 109943 CCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGG 110002 ||| | || || |||| | | ||| | || | | | |||| ||| Sbjct 1855033 CCTGCGAGATGGGGGAGCCCTCGTACGAAGGGTAGGTTCCGACCTCAGCAGCCATCTCAC 1854974 Query 110003 ATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAG 110062 | || | ||| || || || || || || ||||| || || || || | | |||| Sbjct 1854973 ACGAGGACTCGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCCGACGAG 1854914 Query 110063 ACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122 ||| |||||||||| | | | |||||| |||| || |||||||| |||| Sbjct 1854913 CCTCAGGCGAGTCGAAGGGCATGCGGAGAGCCATAAACGCATCGGCCAGACCCTGGACAC 1854854 Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182 | ||||| | ||||| || |||||| ||| ||||| || ||||| ||| Sbjct 1854853 CAAGACCGACTGGGCGGTGACGCATGTTGGAGTTGCGAGCCTCAGGGACAGGGTAGTAGT 1854794 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 |||| |||||| | | || ||||| || ||| ||| ||||| || || || || | Sbjct 1854793 TGCGCGTGATGACACAGTCAAGGTTCTTGGTGACAACCTTGGTGATCTCGTGCAGCTTCT 1854734 Query 110243 CGTAATCGAACGTTTTCGTCTCCTT----ATTGACATATTTGGGGAGAGCAATAGACGCA 110298 | ||||| | | | || | || | |||||| | |||||||| || || ||| Sbjct 1854733 TGAAATCGTA-GCTGCCGCCACCCTCAAAGTTGACAAAGGCAGGGAGAGCGATGGAAGCA 1854675 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 || ||||| || | |||||| | | | ||| || | ||| || || || | |||| Sbjct 1854674 AGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGTGCAGAGGTTG 1854615 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 ||| ||| || || | || || ||| || || ||| |||| || ||||| || Sbjct 1854614 GAAGACTTGATAGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAA 1854555 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGC 110477 |||||| | || |||||| || ||||| | || || || || ||| | | || | Sbjct 1854554 AGCATGAAGGGACCACCAGTCTCGGTCTGAGCCTCAAGGATAGCAAACCAGAGCTTCTGA 1854495 Query 110478 GGCGGGGACAGTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCC 110532 | | | || | ||| | |||| |||| ||||||||| ||| | || Sbjct 1854494 GCC-----TTGATGGTCTTGCG-GCCCTTGCCCTCGCGCTCGTACTTTTCGTAGAGAGCC 1854441 Query 110533 TCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGAC 110592 ||||| |||| || || || | |||||| || | | || || | ||| | | Sbjct 1854440 TCAAACTCCTCCGAGTGGACGTCGGCAAGACCGGGGCACTCGGCAGGGCACATGAGAGTC 1854381 Query 110593 CAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAA 110652 || | || || ||||||| | ||||||||| ||||| |||| ||| | || |||| Sbjct 1854380 CACTCGCCGTCCGCCTCAACGCGCTTCATGAAGAGGTCGGGAACCCAGAGGGCGTAGAAC 1854321 Query 110653 AGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATG 110712 ||||||||| |||| |||| || | || ||||| || || || | ||||| | | Sbjct 1854320 AGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTACGGAGGTCGAGGAAGTCGAAG 1854261 Query 110713 ATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCC 110769 | |||| ||||| || || || |||| || | || || || | ||| || Sbjct 1854260 ACGTCCGCATGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTATTACCGCCC 1854201 Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| || ||||| || || || | | || | | |||||| |||| ||| || | ||| Sbjct 1854200 TGGTCGACGTAGCGGGCAGTCGCGTCGTAGGCACGGAGCATGGGAACAATACCGTTGGAG 1854141 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCA 110889 | ||| || || || ||| || |||||||| |||| |||||| || | ||| Sbjct 1854140 TAACCGTTGGTGCCAGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCG 1854081 Query 110890 ATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATC 110948 ||||| || || ||| || || || || ||| |||| || | || ||||| || Sbjct 1854080 ATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCT-TGAGAGTGTCGTAGATACCGTC 1854022 Query 110949 AATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCC 111008 || || || |||| | || | || ||||| || |||||||| || | | || || Sbjct 1854021 GATAGAGTCATCCTTCATCGCGACGAGGAAGCATGACGACATCTGGGGGTGCTGGGTACC 1853962 Query 111009 CGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGT 111068 || |||||||| ||||| | || || |||| | | |||||| |||||| || Sbjct 1853961 AGCGTTGAAGAGAGTAGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTAGGT 1853902 Query 111069 GTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATA 111128 || | | | | | ||||| |||||||| | ||| ||||||| ||| | Sbjct 1853901 CTCAATGACCTTTTCAATGTTGTCGCCGTGGATACCAATAGAAACACGCATGATCATGTG 1853842 Query 111129 TTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTT 111188 || || ||| | ||| || |||| ||| ||||| ||| || ||||| Sbjct 1853841 CTGGGGACGCTCGGCAACCTTGCCGTCAATGCGCAAGAGGTATGAGCGCTCAAGCGTCTT 1853782 Query 111189 GAGACCAAAGTA 111200 || ||| ||||| Sbjct 1853781 GAAACCGAAGTA 1853770 >seq5 Length=1777877 Score = 168 bits (186), Expect = 8e-37 Identities = 347/506 (69%), Gaps = 15/506 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || |||||||| || || || | || || || || | ||| |||||| ||| || Sbjct 677075 CGGTCGAAACGTCCGGGACGCATGAGGGCGGGGTCGAGCACGTCGGGACGGTTAGTACCG 677134 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || |||||| || || |||||||||||| || ||||||||||||| Sbjct 677135 GCAAGAACGACAATGTGCTCCTTGCTGCTGAAACCGTCCATCTCGACGAGAAGCTGGTTG 677194 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATA---CCACC--TGCCGAACGCTTCTTAC 11677 | || || ||||| |||||| | | || || |||| ||| ||||| Sbjct 677195 AGGGTGGACTCGCGCTCGTCGTTGCCGCCGAACTGTCCGCCCTTGCC--ACGAGCCTTAC 677252 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 ||| || || |||||||| | ||| | |||||| || ||| | || ||| Sbjct 677253 CGATCGCATCGATCTCATCCACGAAGATGATACAGGGGGCGTTCTTCCTCGCGGTGGCGA 677312 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || ||||| ||||| || || ||||| ||||||||||| ||||| | || | | Sbjct 677313 AGAGGTCACGCACACGGGACGGACCGACACCGACGAACATCTCGACGAACTCTGAACCCG 677372 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 || || || | |||||| || || | |||||| ||| | || |||||||| |||||| Sbjct 677373 AA-ACCGACAGGAAGGGCACCTTGGCCTCACCGGCGGTTGCCTTGGCGAGGAGGGTCTTA 677431 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC-CA 11913 || ||||| || | ||| | ||| | |||||| ||||| ||||||||||| |||| | Sbjct 677432 CCGGTACCGGGGGGACCGGAGAGGATGGCGCCGCGGGGAATCTTGGCACCGAGCTTCTCG 677491 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAG 11973 | | | ||| |||| ||| ||||| | |||| |||| || |||||||||||| | Sbjct 677492 TACTTG-GCT--GGCTCCTTCAGGAACTTGACAAACTCCATAATTTCCTCCTTGGCCTCG 677548 Query 11974 TCGATACCCTCAACATCGGTGAAACG 11999 || ||||| | || ||| |||||| Sbjct 677549 TCCATACCAGCGACGTCGCGGAAACG 677574 >seq12 Length=785499 Score = 114 bits (126), Expect = 2e-20 Identities = 166/231 (72%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || |||||||||||||| || |||| || ||||||||||| || Sbjct 745623 TGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGGCCA 745682 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| ||| |||||| |||||||| ||||| || | Sbjct 745683 CGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAAGATACCCTCAACGGCG 745742 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGC 119683 || || || | |||||||| || ||||| |||| | ||| || ||| ||||| Sbjct 745743 GCAAAGGCAATGAGACGCTCCGC-AAAGGACGAGCTGTCGTCCGAGATCCAACGAAGAGC 745801 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||||| |||||| || |||||||||| || | ||| |||| ||| || Sbjct 745802 CCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTTGAAGAG 745852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975882204800