Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 232 8e-56 seq12 102 1e-16 seq1 95.1 1e-14 >seq3 Length=2410059 Score = 232 bits (256), Expect = 8e-56 Identities = 697/1062 (66%), Gaps = 38/1062 (4%) Strand=Plus/Minus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 ||||| |||| || ||||| || ||||| | ||| | || | ||| ||||| || || Sbjct 1854881 ATAAACGCATCGGCCAGACCCTGGACACCAAGACCGACTGGGCGGTGACGCATGTTGGAG 1854822 Query 106331 TTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387 || || || |||| || || || | || | ||||| | || || || ||| Sbjct 1854821 TTGCGAGC---CTCAGGGACAGGGTAGTAGTTGCGCGTGATGACACAGTCAAGGTTCTTG 1854765 Query 106388 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA--- 106444 || |||| ||| ||||| || || || || | |||| | ||| | ||| Sbjct 1854764 GTGACAACCTTGGTGATCTCGTGCAGCTTCTTGAAATCGTAGCTGCCGCCACCCTCAAAG 1854705 Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 |||||| | || || ||||| || || | ||||| || || ||| || | Sbjct 1854704 TTGACAAAGGCAGGGAGAGCGATGGAAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCA 1854645 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 | |||||| | ||| || || || | ||||||| ||| || || || | | || ||| Sbjct 1854644 GAGTACTCGATAATCTCGGTGCAGAGGTTGGAAGACTTGATAGTGCCGAGGTGCTGCTGG 1854585 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||| |||| || |||||||| |||||| |||| || ||||| ||||| Sbjct 1854584 TTGGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGA 1854525 Query 106625 GACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG--GCCCGTCCC 106681 | || || || || ||| | | || | | || | |||| ||| |||| | || Sbjct 1854524 GCCTCAAGGATAGCAAACCAGAGCTTCTGAGCCTTG----ATGGTCTTGCGGCCCTTGCC 1854469 Query 106682 TCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGA 106738 ||| |||||||||| |||||| || ||||||||||| | | | |||||| ||| Sbjct 1854468 CTCGCGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTC--CGAGTGGACGTCGGCAAGA 1854411 Query 106739 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798 || || || | | || || | |||| ||| | || || ||||||| ||||||||| Sbjct 1854410 CCGGGGCACTCGGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTCATG 1854351 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 106858 || ||||| |||| ||| |||| | || || || | ||| |||| || | || Sbjct 1854350 AAGAGGTCGGGAACCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTTCCG 1854291 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 ||||| || | || ||||| || | || ||||| ||||| |||||||| |||| Sbjct 1854290 TGGTTCTTACGGAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAGATG 1854231 Query 106919 GCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTT 106971 || | | || ||| | ||||| || | || ||||| || || |||| Sbjct 1854230 GCAAAGGCACCGGGGCGCTTATTACCGCCC----TGGTCGACGTAGCGGGCAGTCGCGTC 1854175 Query 106972 AAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGA 107029 | | || ||||| |||| |||||| | || | ||| || || || || ||||| Sbjct 1854174 GTAGGCACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAGCAATGTACGA 1854115 Query 107030 GATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATT 107089 | ||||| | | | |||||||| | || ||||| || || ||| ||||| Sbjct 1854114 G--CCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATC 1854057 Query 107090 TGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATA 107149 || || || | | ||||| | |||||||||| ||| ||||| ||||| | |||| Sbjct 1854056 TGAGCGCAGGTCTTGAGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCATCGCGACG 1853997 Query 107150 AGGAAGCAACTGGACATCT-GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGC 107208 |||||||| ||||||| | ||| ||| |||||||| |||||||| || || | || Sbjct 1853996 AGGAAGCATGACGACATCTGGGGGTGCTGG-GTACCAGCGTTGAAGAGAGTAGGCGAGGC 1853938 Query 107209 GTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTC 107268 ||| |||| | | |||||| || ||| ||||| | ||| ||||||| || Sbjct 1853937 GTGGGTGAAGTAGCGCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTGTC 1853878 Query 107269 CCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||||||| || || | |||||||| | ||||| ||||| Sbjct 1853877 GCCGTGGATACCAATAGAAACACGCATGATCATGTGCTGGGG 1853836 >seq12 Length=785499 Score = 102 bits (112), Expect = 1e-16 Identities = 123/166 (74%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||||||||| || || || || || || || |||||| ||||| Sbjct 745611 GCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCA 745670 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || | | || || || |||||||||||| Sbjct 745671 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAAGATA 745730 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAG 117439 ||||| || ||||| |||| || ||||| || ||||| |||| Sbjct 745731 CCCTCAACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGA-CGAG 745775 >seq1 Length=5410471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||| ||||| || ||||| || || || || |||||| ||||| Sbjct 364671 GCAAAGTCGGTGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCG 364612 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||| || || ||||| || | ||| | || ||| || ||||| ||||||||||| Sbjct 364611 CGCATAAGCCCGCGCTTTTTGAGCCAGAAGATGGCGGCAAACGACCCCGAGAAGAAGATG 364552 Query 117394 CCCTCCACACACGCAAACGC 117413 ||||| || ||||||||||| Sbjct 364551 CCCTCGACGCACGCAAACGC 364532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980682003840