Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 1e-13 >seq12 Length=785499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || || ||| | || | || || | |||| Sbjct 767841 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTGC 767782 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || || | |||| |||||||||||| |||||| Sbjct 767781 TTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTG 767722 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | || || || | ||| || |||| ||||| || ||||| || Sbjct 767721 GCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTCTTTCCGGTG 767662 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||| || || ||||||||||| Sbjct 767661 AGAGTCTTGACGAAAATCTGCAT 767639 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| || || || | || |||| || | ||||||||| ||||| Sbjct 768058 CTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAA 767999 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || || | |||| |||||||||||| ||||| || || Sbjct 767998 GATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 767939 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||| | ||| ||||| || || || | ||| || || Sbjct 767938 GTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGAC 767879 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 767878 GAAGATCTGCAT 767867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937525717168