Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 297 4e-75 seq12 242 7e-59 seq1 138 2e-27 >seq3 Length=2410059 Score = 297 bits (328), Expect = 4e-75 Identities = 1126/1743 (65%), Gaps = 58/1743 (3%) Strand=Plus/Minus Query 212687 CAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTC 212746 ||| || | ||||| |||||| |||||| ||||| | | | ||| || || | ||| Sbjct 1855479 CAGGTGAATGTTCAACGACTGAGACTGGTCGATGAAGGCACCACGGTCGGCAGCAAGGTC 1855420 Query 212747 TATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGG 212806 |||| | |||| || | |||||| || |||||| | || |||| || || || Sbjct 1855419 AATGACAGACTTCTGCGAAATCTCCCAGACAGTCTTGTAAATAGACTTGATCTCGTCGGG 1855360 Query 212807 GAAGCCGGGGATGTTCTGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTC 212863 || || || |||| ||| | || || || | ||| |||||| ||||| Sbjct 1855359 GATTCCAGGAATGTGCTGGATCGAACCACCAGAAGCAATGACGAGCTGCTT---CATGTT 1855303 Query 212864 CTCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTT--GA-CCAGGTGAGGGTTGACTATCT 212919 ||||| ||||||| | | | ||| ||| || ||||| || ||| | || Sbjct 1855302 CTCGTCCCAGAGGTCAAGGTTGATGAGGTCACGAAGGAGCCAGG----GGCAGACGACCT 1855247 Query 212920 GGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCT 212979 |||||||||| || || || | | ||| | | || ||||| ||||||| || || Sbjct 1855246 GGAAGTCACCGGAAAGAACACGACGAGAGTAGAGCATCGAGGTGTAAGGCTCGAAGCACT 1855187 Query 212980 CGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGT 213039 |||| || |||||||| | ||| ||| |||||||||||||| || ||||| || Sbjct 1855186 CGTTCCAGCCAAGAATCTGCGAAGTCGAGGCAGTGGGCATGGGAGCGACAAGGAGCGAGT 1855127 Query 213040 TCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACA 213099 | | || |||| || | | || || ||||| |||||| ||| | | | | Sbjct 1855126 TGCGGACACCGTACTTGGCAATCTTCTCACGGAGCTCGTCCCAGTTCCAGAGGTCGGT-A 1855068 Query 213100 GGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGC 213159 || | || || ||| | ||| ||||| | |||| | | |||| || Sbjct 1855067 GGGACACGGCC--------CCAGAGGTCGAACTGGAGCTTGCCCTGCGAGATGGGGGAGC 1855016 Query 213160 CCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAG 213219 ||| ||| || | ||||| || ||| |||| ||| || || | || ||||||| Sbjct 1855015 CCTCGTACGAAGGGTAGGTTCCGACCTCAGCAGCCATCTCACACGAGGACTCGAGGGCAG 1854956 Query 213220 CGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG 213279 ||| ||||||||| || || |||| ||||||| ||||| || || ||||| Sbjct 1854955 CGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCCGACGAGCCTCAGGCGAGTCGAAGG 1854896 Query 213280 GCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTG 213338 |||| | || | ||| |||| ||||| |||||||| || | |||| || | | Sbjct 1854895 GCATGCGGAGAGCCATA-AACGCATCGGCCAGACCCTGGACACCAAGACCGACTGGGCGG 1854837 Query 213339 TGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTT 213397 || | || ||| || ||| |||| ||| | ||||| |||||| ||||| Sbjct 1854836 TGACGCATGTTGGAGTTGCGAGC-CTCAGGGACAGGGTAGTAGTTGCGCGTGATGACACA 1854778 Query 213398 GTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTA 213457 || ||||| |||| | || ||||||| | | ||| | || | || | | | Sbjct 1854777 GTCAAGGTTCTTGGTGACAACCTTGGTGATCTCGTGCAGCTTCTTGAAATCGTAGCTGCC 1854718 Query 213458 GCCCCCGTCC---TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCAC 213514 ||| || || | ||||| |||| || |||||| || |||||||| ||||| || Sbjct 1854717 GCCACCCTCAAAGTTGACAAAGGCAGGGAGAGCGATGGAAGCAAGGTTGCAGACGGCGAC 1854658 Query 213515 CTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCC 213574 ||| | | | | | |||||| || ||||||||||| |||||| | ||| ||||| Sbjct 1854657 CTCGTCGGGGGCAGAGTACTCGATAATCTCGGTGCAGAGGTTGGAAGACTTGATAGTGCC 1854598 Query 213575 CAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCC 213634 |||| ||| ||||| ||||| |||||||| |||||||| |||||| |||| || Sbjct 1854597 GAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAGGGACCACC 1854538 Query 213635 GGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCT 213694 ||||| ||| | | | || || |||||| | | ||||||| | || Sbjct 1854537 AGTCTCGGTCTGAGCCTCAAGGATAGCAAACCAGAGCTTCTGAGCCTTGATG----GTCT 1854482 Query 213695 GACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG- 213752 | || | | | | || |||||||| ||||||||| | | || || | || || Sbjct 1854481 TGCGGCCCTTGCCCTCGCGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCT---CCGAGT 1854425 Query 213753 --ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTC 213810 || | | || || || || || || |||||||| |||| || ||||| | Sbjct 1854424 GGACGTCGGCAAGACCGGGGCACTCGGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCT 1854365 Query 213811 TGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCC 213870 || | || |||||| ||||| || ||||| || ||| ||||||||| | || | Sbjct 1854364 CAACGCGCTTCATGAAGAGGTCGGGAACCCAGAGGGCGTAGAACAGGTCACGGGCACGAA 1854305 Query 213871 TCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 ||| ||| ||| ||| || || || || || ||||| |||| |||||| ||||| | Sbjct 1854304 CCTCCTCCTTTCCGTGGTTCTTACGGAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAG 1854245 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGG 213987 |||| | ||||||||||||||| || | || | || ||||||||||| || | || Sbjct 1854244 GCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTATTACCGCCCTGGTCGACGTAGCGGG 1854185 Query 213988 CCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCG 214047 | | || | || || || | ||| || | |||||||| | |||||||| || | Sbjct 1854184 CAGTCGCGTCGTAGGCACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAG 1854125 Query 214048 CTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACT 214107 | || |||||||| ||| | | |||| ||| ||| || || || ||||| || Sbjct 1854124 CAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCT 1854065 Query 214108 TGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGA 214167 |||||||| |||||| | | | ||| || ||| ||| | || |||||| | | Sbjct 1854064 TGGAGATCTGAGCGCAGGTCTTGAGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCA 1854005 Query 214168 GGTTCAGCAAGAAGCAGCTCGAGAGCTGGGG--CCTGGACGAGCCAGAGTTGAAAAGCGT 214225 | | |||||| ||| | |||||| |||| | |||| |||||| || || Sbjct 1854004 TCGCGACGAGGAAGCATGACGACATCTGGGGGTGCTGG--GTACCAGCGTTGAAGAGAGT 1853947 Query 214226 GGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGG 214285 || ||| ||| | | | | || | ||| |||||||||| | ||| Sbjct 1853946 AGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTC 1853887 Query 214286 GATGTCGTGCTTGTGGAT--CTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCT 214343 |||| || |||||| | |||| || | ||| | |||||||||||| | ||| Sbjct 1853886 AATGTTGTCGCCGTGGATACCAATAGA-AACA-CGCATGATCATGTGCTGGGGACGCTC- 1853830 Query 214344 ATGGGTCCTTTGGGGCCCTTGAGC---AGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAG 214400 || | ||| | | || || ||||| |||||||| || |||||||| || ||| Sbjct 1853829 --GGCAACCTTGCCGTCAATGCGCAAGAGGTATGAGCGCTCAAGCGTCTTGAAACCGAAG 1853772 Query 214401 TAG 214403 ||| Sbjct 1853771 TAG 1853769 >seq12 Length=785499 Score = 242 bits (268), Expect = 7e-59 Identities = 368/518 (71%), Gaps = 7/518 (1%) Strand=Plus/Plus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 ||| |||||||| | ||| |||| || |||||| ||||||| ||| ||||||||||| Sbjct 745340 CTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 745399 Query 47920 TGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGA 47978 | || || | | | || ||| | | ||||| | || ||||| |||| | Sbjct 745400 CGACTTGTAAATCT-TCTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAA 745458 Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038 |||| | |||||||| || ||||||||| ||||| |||||||| | ||||| |||| Sbjct 745459 TGTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGAGACACGGGGAGAGCCTCGGTGA 745518 Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGG 48098 | ||||||| ||| |||| ||||| || | | |||| || || | || | | || Sbjct 745519 GGAACTCCTGCTCAATCTTGACGGCCTCGCGGATGATCTTCTCAATGAGGT-CGGGGTGG 745577 Query 48099 GTTTGTTGCG-CAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCG 48157 | | || |||||| || |||| | || |||||||| |||| | || ||| Sbjct 745578 GGGCGACGCTTCAGGTGGGTGA---AGAGGAGACAAGCAAAGTCGGTGTGGAGACCCTCG 745634 Query 48158 TCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGC 48217 || || ||||||| ||||||||||| ||| |||||||||| || | || |||||| Sbjct 745635 TCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGGCCACGCTTCTTGAGC 745694 Query 48218 CAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTG 48277 ||||| || | || || || |||||||||||||| ||||| || || || || || || Sbjct 745695 CAGAAGATGGAGGCAAACGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAAGGCAATG 745754 Query 48278 AGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTC 48337 || | ||| | || || | | | | ||| |||||||| ||| |||||||| |||||| Sbjct 745755 AGACGCTCCGCAAAGGACGAGCTGTCGTCCGAGATCCAACGAAGAGCCCAGTCGGCCTTC 745814 Query 48338 TTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||||||||||| || || ||||| || || |||||| Sbjct 745815 TTCTTGATGCAGGGGATGGTCTCGATAGCTTTGAAGAG 745852 >seq1 Length=5410471 Score = 138 bits (152), Expect = 2e-27 Identities = 201/278 (72%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 48001 GTTCATGCCTATGAGGGACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA 48059 ||| ||||| ||||||| ||| |||| || | ||||| ||||||||||| |||| || Sbjct 364801 GTTGATGCCGATGAGGG-CACATGGCAGGGCGTCGGTGAGGAACTCCTTCTCGATCTCCA 364743 Query 48060 CGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG--TTTGTTGCG-CAGGTGCT 48116 | |||||| ||||||| | || |||| | || | ||| ||||||| Sbjct 364742 CCGCTTCCGACACAATCGCGTGTACTTC---CTCTTCAGTACTTCGGTGCTTCAGGTGC- 364687 Query 48117 TGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGT 48176 | ||| |||| || |||||||| |||| | ||| ||||| ||| ||||||| ||| Sbjct 364686 --GAATACAGCAGACATGCAAAGTCGGTGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGT 364629 Query 48177 TGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG 48236 |||||||| || || |||| | ||| | || |||||||||||| || || || || | Sbjct 364628 TGGAGAAGGTCAGGCCGCGCATAAGCCCGCGCTTTTTGAGCCAGAAGATGGCGGCAAACG 364569 Query 48237 AGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 | || ||||||||||||||||| || ||| |||||| Sbjct 364568 ACCCCGAGAAGAAGATGCCCTCGACGCACGCAAACGCG 364531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532613693440