Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 268 2e-66 seq12 154 3e-32 seq1 123 5e-23 >seq3 Length=2410059 Score = 268 bits (296), Expect = 2e-66 Identities = 810/1240 (65%), Gaps = 36/1240 (3%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479 ||||||||||||||||||||||| |||||| |||||| | ||||| || || Sbjct 1854962 AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCCGACGAGCCTCAGGCGAG 1854903 Query 221480 GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATG 221539 ||||||||| || || | ||| | |||||||| ||||| || || | ||||| Sbjct 1854902 TCGAAGGGCATGCGGAGAGCCATAAACGCATCGGCCAGACCCTGGACACCAAGACCGACT 1854843 Query 221540 GGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA-CGTCGAT 221598 || | ||| | | ||||||| | || || || || || || ||||| ||| ||| Sbjct 1854842 GGGCGGTGACGCATGTTGGAGTTGCGAGCCTCAGGGACAGGGTAGTAGTTGCGCGT-GAT 1854784 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | | || |||||| |||| || || | |||| |||||||| | || | | Sbjct 1854783 GACACAGTCAAGGTTCTTGGTGACAACCTTGGTGATCTCGTGCAGCTTCTTGAAATCGTA 1854724 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || |||||| | | | | | ||||| || || || | | || || Sbjct 1854723 G-----CT-GCCGCCACCCTCAAAG---TTGACAAAGGCAGGGAGAGCGATGGAAGCAAG 1854673 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || ||||| |||||||| | | |||| || ||||| || ||||||||| Sbjct 1854672 GTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGTGCAGAGGTTGGA 1854613 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 ||||||| || || ||||| | || || |||||||| ||||||||||||||||| || Sbjct 1854612 AGACTTGATAGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAAAG 1854553 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| |||||||| |||||||| ||||||| | || || |||||| | |||| | Sbjct 1854552 CATGAAGGGACCACCAGTCTCGGTCTGAGCCTCAAGGATAGCAAACCAGAGCT-TCTGAG 1854494 Query 221898 CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | |||| | | | |||| |||||| ||| ||||| Sbjct 1854493 CCTTGATGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTTTC-------GTAGAGAGC- 1854442 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 ||||||| || || | ||| | || || || ||| ||| || ||||| ||| Sbjct 1854441 -CTCAAACTCCTCCGAGTGGACGTCGGCAAGACCGGGGCACTCGGCAGGGCACATGAGAG 1854383 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||| | || | | || | || |||||||||||| || | ||| || || | | Sbjct 1854382 TCCACTCGCCGTCCGCCTCAACGCGCTTCATGAAGAGGTCGGGAACCCAGAGGGCGTAGA 1854323 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | || || | || || ||||||| |||| ||| || | || || | || || | Sbjct 1854322 ACAGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTACGGAGGTCGAGGAAGTCGA 1854263 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | ||| || ||||| ||||| || |||| ||| | || ||||| ||||| || || | Sbjct 1854262 AGACGTCCGCATGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTATTACCGC 1854203 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||| || || | | |||| | || || || | || || | ||||||| Sbjct 1854202 CCTGGTCGACGTAGCGGGCAGTCGCGTCGTAGGCACGGAGCATGGGAACAATACCGTTGG 1854143 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATG 222310 | |||||||||||| |||||||| || ||| | | ||| ||| | | Sbjct 1854142 AGTAACCGTTGGTGCCAGCAATGTACGAGCCCTTGGCACGGATGTT-GTGGATGTGGAGA 1854084 Query 222311 CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCC 222370 |||||||| ||||| || |||||| |||||| ||||||||||||| ||| || Sbjct 1854083 CCGATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGAGTGTCGTAGATACCG 1854024 Query 222371 TCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAA 222430 || |||||||| ||||| | | || || || ||||||||||| | | || | Sbjct 1854023 TCGATAGAGTCATCCTTCATCGCGACGAGGAAGCATGACGACATCTGGGGGTGCTGGGTA 1853964 Query 222431 CAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTAC 222490 | ||||| || || || || |||||| || ||||||| | ||||| || | ||| Sbjct 1853963 CCAGCGTTGAAGAGAGTAGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTAG 1853904 Query 222491 GTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATG 222550 ||||| | ||| | | |||||||| ||||| || || | | |||| |||| Sbjct 1853903 GTCTCAATGACCTTTTCAATGTTGTCGCCGTGGATACCAATAGAAACACGCATGATCATG 1853844 Query 222551 TACTGGGGCCTCTCCACAGGACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTCCAGA 222607 | |||||| | || | | | ||||| | || | ||||| || || || Sbjct 1853843 TGCTGGGGACGCT---CGGCAACCTTGCCGTCAATGCGCAAGAGGTATGAGCGCTCAAGC 1853787 Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGT 222647 |||||||| || ||||||||| ||||||| | | ||| Sbjct 1853786 GTCTTGAAACCGAAGTAGTTGTAAGCAAAGTCACGGTCGT 1853747 >seq12 Length=785499 Score = 154 bits (170), Expect = 3e-32 Identities = 343/517 (66%), Gaps = 25/517 (5%) Strand=Plus/Minus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 || |||||| ||| ||| ||||||||| |||||| ||||| | |||||| Sbjct 745843 GCTATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTTCGTTGGATCTCG 745784 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | | ||| | | |||| ||||| || | |||||||| || || ||||| ||||| Sbjct 745783 GACGACAGCTCGTCCTTTGCGGAGCGTCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTC 745724 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| || |||||||| ||||||||||||||||| || || |||||| || || Sbjct 745723 TTCTCTGGATCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTC 745664 Query 25975 TACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 ||| ||||||||||||||| | |||||||||||||||| || ||||| || || Sbjct 745663 ACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCTTGTCTC 745604 Query 26035 CTCTACACGGGCCACTTG------CTCCACAAACC--TTCTCA-AGAGACCGTCTACAGT 26085 |||| ||| |||| || | || | | || |||| |||| || Sbjct 745603 CTCTTCAC---CCACCTGAAGCGTCGCCCCCACCCCGACCTCATTGAGA--------AG- 745556 Query 26086 ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNN 26145 |||||| ||||| || |||| ||| ||||||| | Sbjct 745555 ATCATCCGCGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTCCCCGTGTCT 745496 Query 26146 NNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTG 26205 | ||||||||| || |||||| |||| |||||||||| ||| ||||||| |||| Sbjct 745495 CTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTG 745436 Query 26206 CT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGG 26263 || || ||| || || || | | |||| || | ||||| ||||||||||||| Sbjct 745435 CTCGTCGCC--CTCGGCAACGAGAAGATTTACAAGTCGACCAACCCCTTCGACTTTATGG 745378 Query 26264 AAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 | | || ||| || | || ||| |||||||||| || Sbjct 745377 AGATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGA 745341 >seq1 Length=5410471 Score = 123 bits (136), Expect = 5e-23 Identities = 175/243 (72%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 25879 CGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCAT 25937 ||| || | || ||||| ||| || ||||||||||| ||| || |||||||| ||||| Sbjct 364523 CGGTTGATCGCGTTTGCGTGC-GTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCAT 364581 Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||||||||| || ||| |||| ||| ||| ||| ||||||||||||||| Sbjct 364582 CTTCTGGCTCAAAAAGCGCGGGCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTC 364641 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 | | |||||||| ||||||| || ||||| || ||||| || || ||| || || Sbjct 364642 CCGCGACGAGGGCCTCCACACCGACTTTGCATGTCTGCTGTATTCG---CACCTGAAGCA 364698 Query 26058 CAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117 | | | || ||||| || || || | || || ||||||||||||||||| Sbjct 364699 CCGAAGTACTGAAGAGGAAGTACACGCGATTGTGTCGGAAGCGGTGGAGATCGAGAAGGA 364758 Query 26118 GTT 26120 ||| Sbjct 364759 GTT 364761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844614231040