Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 214 2e-50 seq12 102 1e-16 seq1 95.1 1e-14 seq5 89.7 6e-13 >seq3 Length=2410059 Score = 214 bits (236), Expect = 2e-50 Identities = 691/1058 (65%), Gaps = 30/1058 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || | || || |||||||| || ||||||| ||| Sbjct 1853836 CCCCAGCACATGATCATGCGTGTTTCTATTGGTATCCACGGCGACAACATTGAAAAGGTC 1853895 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| || |||||| | | |||| ||||| | || || |||||| Sbjct 1853896 ATTGAGACCTACAACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCTACTCTCTTC 1853955 Query 75332 AATGCTGGTACACCAAGACCGC-AGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || |||||||| ||| ||| | ||||||| |||||||| |||| | ||||| || Sbjct 1853956 AACGCTGGTAC-CCAGCACCCCCAGATGTCGTCATGCTTCCTCGTCGCGATGAAGGATGA 1854014 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| |||||||||| | ||||| | | || || || ||||| ||| || || Sbjct 1854015 CTCTATCGACGGTATCTACGACACTCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGG 1854074 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 75508 ||||| || | |||||||| | | | ||||| |||||| || || || Sbjct 1854075 CGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGG--CTCGTACATTGCTGGCACC 1854132 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| | || | |||||| |||| ||||| || | | |||| || || ||||| Sbjct 1854133 AACGGTTACTCCAACGGTATTGTTCCCATGCTCCGTGCCTACGACGCGACTGCCCGCTAC 1854192 Query 75569 GTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 || | || | || | ||| || || | || ||||| | || || |||||| Sbjct 1854193 GTCGACCAGGGCGGTAATAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCAT 1854252 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || || || | || ||||| || | || ||||| || | || |||| ||| Sbjct 1854253 GCGGACGTCTTCGACTTCCTCGACCTCCGTAAGAACCACGGAAAGGAGGAGGTTCGTGCC 1854312 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || || || | |||| ||| |||| ||||| ||||||||||| ||||||| || Sbjct 1854313 CGTGACCTGTTCTACGCCCTCTGGGTTCCCGACCTCTTCATGAAGCGCGTTGAGGCGGAC 1854372 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTGGGTG 75803 || | ||| |||| | || || | | || || ||||| |||||| | | | | Sbjct 1854373 GGCGAGTGGACTCTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGACGTCCACTCG--G 1854430 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG-TAGAGC--CAATGCGACTG 75860 |||||||||| || |||||| |||||| || ||||| || || ||| ||| Sbjct 1854431 AGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGCGAGGGCAAGGGCCGCAA---GACCA 1854487 Query 75861 TACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCA 75919 | | || | | || | | ||| ||||| || | | ||||| |||||||| || Sbjct 1854488 T-CAAGGCTCAGAAGCTCTGGTTTGCTATCCTTGAGGCTCAGACCGAGACTGGTGGTCCC 1854546 Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979 | |||||||||||||| ||| ||| ||| ||||| || | | || || ||| Sbjct 1854547 TTCATGCTTTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACTATC 1854606 Query 75980 AAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 ||| || || || ||||| || ||| | |||||| | | || ||| || || Sbjct 1854607 AAGTCTTCCAACCTCTGCACCGAGATTATCGAGTACTCTGCCCCCGACGAGGTCGCCGTC 1854666 Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGAGACTCGCACTTTT 76096 ||||| | || || ||||| || || | |||||| ||| | ||| | Sbjct 1854667 TGCAACCTTGCTTCCATCGCTCTCCCTGCCTTTGTCAACTTTGAGGGTGGCGGCAGCTAC 1854726 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 |||| | || || || || ||||| ||| |||| ||||| || || || | ||||| Sbjct 1854727 GATTTCAAGAAGCTGCACGAGATCACCAAGGTTGTCACCAAGAACCTTGACTGTGTCATC 1854786 Query 76157 GACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 | || | || || || |||| || || || || || ||||| ||| | || Sbjct 1854787 ACGCGCAACTACTACCCTGTCCCTGAG---GCTCGCAACTCCAACATGCGTCACCGCCCA 1854843 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT 76251 | ||| | ||||| || ||||| || |||| ||||| Sbjct 1854844 GTCGGTCTTGGTGTCCAGGGTCTGGCCGATGCGTTTAT 1854881 >seq12 Length=785499 Score = 102 bits (112), Expect = 1e-16 Identities = 123/166 (74%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 65063 CTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCG 65122 |||| ||||| || ||||| || |||| ||||| || ||||||||||||||||| | Sbjct 745775 CTCG-TCCTTTGCGGAGCGTCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCTCTG 745717 Query 65123 GGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCT 65182 | || || | | || | ||| | |||||||| || |||||||| ||||| ||||| Sbjct 745716 GATCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTCACCTTCT 745657 Query 65183 CAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | || || || || || || || |||||||||||| || ||||| Sbjct 745656 CCAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGC 745611 >seq1 Length=5410471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTG 65148 ||||||||||| || ||||| ||||||||||| ||||| || ||| || | ||| | Sbjct 364532 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTGGCTC 364591 Query 65149 AAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAG 65208 || ||||| || || |||| ||||| |||||| || || || || ||||| || ||| Sbjct 364592 AAAAAGCGCGGGCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 364651 Query 65209 GGTCTCCACCAGGAGTTTGC 65228 || |||||| || ||||| Sbjct 364652 GGCCTCCACACCGACTTTGC 364671 >seq5 Length=1777877 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||| ||||| |||||| | ||| | ||| || ||||| || ||||||||| Sbjct 677481 GGTGCCAAGATTCCCCGCGGCGCCATCCTCTCCGGTCCCCCCGGTACCGGTAAGACCCTC 677422 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||| || | ||| ||||| | || || || ||| | | || | || | Sbjct 677421 CTCGCCAAGGCAACCGCCGGTGAGGCCAAGGTGCCCTTCCTGTCGGTTTCGGGTTCAGAG 677362 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || |||||||| || ||||| ||| | | || || || ||||| | | ||| Sbjct 677361 TTCGTCGAGATGTTCGTCGGTGTCGGTCCGTCCCGTGTGCGTGACCTCTTCGCCACCGCG 677302 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG 175509 | | || || ||||| ||||| | |||||||| |||||| | || ||| Sbjct 677301 AGGAAGAACGCCCCCTGTATCATCTTCGTGGATGAGATCGATGCGATCGGTAAG 677248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569480686080